View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_high_22 (Length: 317)
Name: NF0063_2D_high_22
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 2492104 - 2491820
Alignment:
| Q |
20 |
aagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaata |
119 |
Q |
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| T |
2492104 |
aagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatc |
2492005 |
T |
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| Q |
120 |
tgtatttttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactggaagatcat |
219 |
Q |
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| T |
2492004 |
tgta--tttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactggaagatcat |
2491907 |
T |
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| Q |
220 |
tttaacnnnnnnnctaactgtagatgcttgttcaaaagcagctctaagatatttttatatggctacacttattttccttgtgatgtc |
306 |
Q |
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| T |
2491906 |
tttaactttttttctaactgtagatgcttgttgaaaagcagctctaagatatttttatatggctacacttactttccttgtgatgtc |
2491820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 2488812 - 2488636
Alignment:
| Q |
27 |
ttacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatatgtattt |
126 |
Q |
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| T |
2488812 |
ttacatggtgaaccagatacatgtactttttgcgtttatttaagttgagaggagtatgtatttaacttataagaaagtctttgttggagaataagta--t |
2488715 |
T |
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| Q |
127 |
ttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaat |
205 |
Q |
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| T |
2488714 |
ttataaagaagctaaccacggacgtttaggagataaaatgttaacttatataacaagctactgtttaaagacttgaaat |
2488636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 2495150 - 2495102
Alignment:
| Q |
156 |
aagttaagatgttaacttacatgagaagctatt-attaaaagacttgaa |
203 |
Q |
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| T |
2495150 |
aagttaagatgttaacttatatgacaagctattgtttaaaagacttgaa |
2495102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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