View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_high_27 (Length: 276)
Name: NF0063_2D_high_27
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 8064457 - 8064272
Alignment:
| Q |
72 |
ttttcatttttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggag |
171 |
Q |
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| T |
8064457 |
ttttcatttttgtagtgggttatacataactggaatgatgatgattgtgtaaagatacttaaaaagtgtaaagaagctgcttcaaggcaaaagaaaggag |
8064358 |
T |
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| Q |
172 |
gaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataaca |
257 |
Q |
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| T |
8064357 |
gaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataaca |
8064272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 8074503 - 8074328
Alignment:
| Q |
80 |
tttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggaggaaaagtg |
179 |
Q |
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| T |
8074503 |
tttgtagtggattttgcataactggaatgatgatgactgtgtcaagatacttagaaattgtaaagaagctgtatcaaggaaaaacaaagaaggaaaagtg |
8074404 |
T |
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| Q |
180 |
atcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataa |
255 |
Q |
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| T |
8074403 |
atcataatagatattgtgataaatgaagagcaagatgagcatgaaatgacagaactcaaactcttctttgacataa |
8074328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 8064626 - 8064562
Alignment:
| Q |
9 |
aatccagattccagacacaacaaagtattattaatccatacattattaattagcttaatttcctt |
73 |
Q |
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| T |
8064626 |
aatccagattccagacacaacaaagtattgttaagccatgcattattaattaacttaatttcctt |
8064562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 34949988 - 34949830
Alignment:
| Q |
77 |
atttttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggaggaaaa |
176 |
Q |
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| T |
34949988 |
atttttgcagtgggttttacacaattggggtgatgatgattgcattaagatactaaaaaactgcaagaaagctatttctggaaaagagaaaggaggaaaa |
34949889 |
T |
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| Q |
177 |
gtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagt |
235 |
Q |
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| T |
34949888 |
gtgataatcatagatgttgtgataaatgaaaaacaagatgaacatgaaatgacagaagt |
34949830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 34945502 - 34945430
Alignment:
| Q |
163 |
agaaaggaggaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagt |
235 |
Q |
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| T |
34945502 |
agaaaggaggaaaagtgataatcatagatgcagtgataaatgaaaaacaagatgaacatgaaatgacagaagt |
34945430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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