View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_high_34 (Length: 255)
Name: NF0063_2D_high_34
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_34 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 43192350 - 43192604
Alignment:
| Q |
1 |
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt |
100 |
Q |
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| T |
43192350 |
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt |
43192449 |
T |
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| Q |
101 |
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttccagacttccacttgtatatatta |
200 |
Q |
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| T |
43192450 |
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttccagacttccacttgtatatatta |
43192549 |
T |
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| Q |
201 |
gtacaaacacaataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat |
255 |
Q |
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| T |
43192550 |
gtacaaacacaataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat |
43192604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 43195469 - 43195203
Alignment:
| Q |
1 |
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt |
100 |
Q |
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| T |
43195469 |
atctaagaaaagcagatcagaagacaacaccacttacatcaaagtcccatgatggatcaccctttctttcagtaatgtcaattgcacctttaaactcctt |
43195370 |
T |
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| Q |
101 |
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttc-------cagacttccacttgta |
193 |
Q |
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| T |
43195369 |
aattataggtagtggacggggacggtctccggataaatcactacagagcaacaaaatgaattcaagtgatcaagttctacacgtaacacgtccacttgta |
43195270 |
T |
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| Q |
194 |
tatattagtacaaacaca-----ataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat |
255 |
Q |
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| T |
43195269 |
tatattagtacaaacacacatacaaaggaaaaataaaaattgaggaactaaaaccaaccttgtccat |
43195203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 53672954 - 53672800
Alignment:
| Q |
19 |
agtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactccttaattgtaggtagtgggcg |
118 |
Q |
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| T |
53672954 |
agtagacaacatcacttacatcaaagtcccatgatggatcgccattcctttcaataatatcaactgcatccctaaactcctcgataaaaggtagtgtacg |
53672855 |
T |
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| Q |
119 |
aggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaa |
173 |
Q |
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| T |
53672854 |
gggataatctccagataaatcactgcccatcaacaaaaagaagtcaaatgatcaa |
53672800 |
T |
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