View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_high_38 (Length: 225)

Name: NF0063_2D_high_38

Description: NF0063_2D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0063_2D_high_38

[»] chr8 (1 HSPs)

Alignment Details

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 152; E-Value: 1e-80

Query Start/End: Original strand, 18 - 177

Target Start/End: Complemental strand, 30635750 - 30635591

Alignment:

Q	18	catactagactcaggagaatattaatttcaaaatcaaactagttgcagtcgaacacatgcattatgcatgacacattttttatttaaaaatgcaatgaat	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	30635750	catactagactcaggagaatattaatttcaaaatcaaactagttgcagtcgaacacatgcattatgcatgacacattttttatttaaaaatacaatgaat	30635651	T

Q	118	cagaggctagaatataaaaatcttatattatttactttagtcaacaattcccttgctctc	177	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30635650	cagaggctagaatatagaaatcttatattatttactttagtcaacaattcccttgctctc	30635591	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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