View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_high_39 (Length: 208)
Name: NF0063_2D_high_39
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_high_39
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 2813751 - 2813931
Alignment:
Q
9
tggtgttctctgaggagttcttaaagaagtcatggcttgggtgggtgtctgtggataattagggagaagagcacgagtagcaatgctgcctttggtgagt
108
Q
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
T
2813751
tggtgttctctgaggagttcttaaaggagtcatggcttggttgggtgtctgtggataattagggagaagagcacgagtagcactgctgcctttggtgagt
2813850
T
Q
109
tcatcgctgcccacaaggtcactggcataaccaaacttggcaatttcatccaattcttgatcggaaatctgaggtggtgga
189
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2813851
tcatcgctgcccacaaggtcactggcataaccaaacttggcaatttcatccaattcttgatcggaaatctgaggtggtgga
2813931
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 47753063 - 47752883
Alignment:
Q
9
tggtgttctctgaggagttcttaaagaagtcatggcttgggtgggtgtctgtggataattagggagaagagcacgagtagcaatgctgcctttggtgagt
108
Q
|||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||
T
47753063
tggtgttctctgaggagttcttaaaggagtcttggcttggttgggtgtctgtggataattagggagaagagcacgggtagcactgctaccttcggtgagt
47752964
T
Q
109
tcatcgctgcccacaaggtcactggcataaccaaacttggcaatttcatccaattcttgatcggaaatctgaggtggtgga
189
Q
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
T
47752963
tcctcgctgcccacaaggtcactggcataacccaacttggcaatttcatccaattcttgatcggaaatctgaggcggtgga
47752883
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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