View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_high_4 (Length: 715)
Name: NF0063_2D_high_4
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_high_4
Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 19 - 698
Target Start/End: Original strand, 47333048 - 47333732
Alignment:
Q
19
aatacggtgattttgaccgtttttacattggtggtgatacttcaggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaacttt
118
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47333048
aatacggtgattttgaccgtttttacattggtggtgatacttcaggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaacttt
47333147
T
Q
119
acctggtgatgtgaaaattagaggagcattacttgcttttcctttgttttggagttcgaagccgattttgtcagaatcagttgaagggcatgaacaaagt
218
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
47333148
acctggtgatgtgaaaattagaggagcattacttgcttttcctttgttttggagttcgaagccggttttgtcagaatcagttgaagggcatgaacaaagt
47333247
T
Q
219
tcacctatgaaagtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttggata
318
Q
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47333248
tcacctatgaaagtatggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttggata
47333347
T
Q
319
ttattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgttaagaaaagtggttggaa
418
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47333348
ttattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgttaagaaaagtggttggaa
47333447
T
Q
419
aggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagaattctattgatatggtcaaacgtattgct
518
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
47333448
aggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagagttctattgatatggtcaaacgtattgct
47333547
T
Q
519
tcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaattcatgatcaattttaat
618
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47333548
tcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaattcatgatcaattttaat
47333647
T
Q
619
tatcctgttttgtttat---ggatattcaattcaatgaa--tcatatttttcttttatactgcaatcacgacaatcatgatattg
698
Q
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
T
47333648
tatcctgttttgtttatatgggatattcaattcaatgaatttcatatttgtcttttatactgcaatcacgacaatcatgatattg
47333732
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 47301704 - 47301763
Alignment:
Q
231
gtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcct
290
Q
||||||||||||||||||||| ||||| |||||||||||||| ||| |||| ||||||
T
47301704
gtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcct
47301763
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 421
Target Start/End: Original strand, 17841841 - 17842031
Alignment:
Q
231
gtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttggatattattggttgtc
330
Q
||||||||||||||||||||| |||||| ||||||||||||| ||| |||| |||||| ||| ||| | || || ||||||||| ||||||||
T
17841841
gtttggaattttgtgtatccttcagcaccttgtgggattgataatcctatgattaatcctgtgggtataggggcacctagtttggatggacttggttgtg
17841940
T
Q
331
ctaagat-attgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgttaagaaaagtggttggaaagg
421
Q
|| ||| |||| ||| |||||||||||| |||| ||||| || |||||| ||||||| ||||| ||| ||||| ||||||||||||||
T
17841941
ataggatgattg-tttgtgttgctgggaaagatggattaagggagagaggggtttggtattatgagcttgtgaagaagagtggttggaaagg
17842031
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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