View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_high_40 (Length: 205)
Name: NF0063_2D_high_40
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_high_40
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 32855859 - 32855684
Alignment:
Q
13
caacaggtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaatt
112
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
32855859
caacaggtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgatt
32855760
T
Q
113
gatgtgagcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac
188
Q
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
T
32855759
gatgtgagcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac
32855684
T
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 32850369 - 32850285
Alignment:
Q
85
gtagagcagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaattcaacacca
169
Q
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
32850369
gtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaattcaacacca
32850285
T
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32850460 - 32850420
Alignment:
Q
13
caacaggtagcacttgatattttcagctggaaaggacctga
53
Q
|||||||||||| ||| ||||||||||||||||||||||||
T
32850460
caacaggtagcagttggtattttcagctggaaaggacctga
32850420
T
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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