View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_high_5 (Length: 586)
Name: NF0063_2D_high_5
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 21 - 574
Target Start/End: Original strand, 26861285 - 26861838
Alignment:
| Q |
21 |
attggatacatggtatcttaagttgtcatatactcgtatcaattttcaccaagactatgtacagagcaagttgtttaatgaattagcttcaccccttgtc |
120 |
Q |
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| T |
26861285 |
attggatacatggtatcttaagttgtcatatactcgtatcaattttcaccaagactatgtacagagcaagttgtttaatgaattagcttcaccccttgtc |
26861384 |
T |
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| Q |
121 |
ccttttgagattagtgttttagttgcttgacctggttcaaggcaagcagaaaaatgtttatgttttagttagccttgttaaggatgttctaagctgctat |
220 |
Q |
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| T |
26861385 |
ccttttgagattagtgttttagttgcttgacctggttcaaggcaagcagaaaaatgtttatgttttagttagccttgttaaggatgttctaagctgctat |
26861484 |
T |
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| Q |
221 |
tgtttataagatcatctttatcatgctaagactagcttcaagtatacttgctaaaacttgctggataagtggttcaaacacctaattttatatacatgtg |
320 |
Q |
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| T |
26861485 |
tgtttataagatcatctttatcatgctaagactagcttcaagtatacttgctaaaacttgctggataagtggttcaaacacctaattttatatacatgtg |
26861584 |
T |
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| Q |
321 |
taccacatgcaatgacagttagcacacacttctgatttagatttgtagtgtgtttgattatgcggcagaaaggctgtcatctgtatacataaaagctaca |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26861585 |
taccacatgcaatgacagttagcacacacttctgatttagatttgtagtgtgtttgattatgcggcagaaaggctgtcatctgtatacataaaagctaca |
26861684 |
T |
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| Q |
421 |
atatctagcttcaatgtaatcccatatctgcagtattaccatgtgacaccaaacatatgcttagacaatccattttagaggtggtatgatgtcttgttgt |
520 |
Q |
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| T |
26861685 |
atatctagcttcaatgtaatcccatatctgcagtattaccatgtgacaccaaacatatgcttagacaatccattttagaggtggtatgatgtctttttgt |
26861784 |
T |
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| Q |
521 |
atcagaatcaactttatatggtgttcatgcttcatagtagccttccaacaccaa |
574 |
Q |
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| T |
26861785 |
atcagaatcaactttatatggtgttcatgcttcatagtagccttccaacaccaa |
26861838 |
T |
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