View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_high_8 (Length: 572)
Name: NF0063_2D_high_8
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 22634159 - 22634528
Alignment:
| Q |
17 |
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg |
116 |
Q |
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| T |
22634159 |
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg |
22634258 |
T |
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| Q |
117 |
caaaatcattgagggtcttgctaacgagtgtattaaagacatttattaaagaaatcaaatgtacatctattacattggaaacacaacatttgaaaaagtt |
216 |
Q |
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| T |
22634259 |
caaaatcgttcagggtcttgataacgagtgtattaaagacatttattaaagaaatcaaatgtacaccttttacat--------------ttgaaaaagtt |
22634344 |
T |
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| Q |
217 |
gaatacacaattttccaatataaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc |
316 |
Q |
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| T |
22634345 |
gaatacacaattttccaatgtaaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc |
22634444 |
T |
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| Q |
317 |
tcaacacaaaatttcaaacttctcagttgctttttgggtggtgtgtgttttgcttttatcaggaaaaagcaagtgaaatgatac |
400 |
Q |
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| T |
22634445 |
tcaacacaaaatttcaaacttctcagttgcttttttggtggtgagtgttttgcttttatcaggaaaaagcaagtgaaatgatac |
22634528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 556
Target Start/End: Original strand, 22634613 - 22634684
Alignment:
| Q |
485 |
aacaggaaaaagcagagtgctttgcatcnnnnnnnnctactttaattaaaactcttccactcgttacttttg |
556 |
Q |
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| T |
22634613 |
aacaggaaaaagcagagtgctttgcatcttttttttctactttaattaaaactcttccactcgttacttttg |
22634684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 45418894 - 45418851
Alignment:
| Q |
209 |
aaaaagttgaatacacaattttccaatataaaatttctatattt |
252 |
Q |
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| T |
45418894 |
aaaaagttgaatacacaattttccaacacaaaatttatatattt |
45418851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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