View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_2D_low_10 (Length: 668)
Name: NF0063_2D_low_10
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 4 - 650
Target Start/End: Original strand, 43192974 - 43193620
Alignment:
| Q |
4 |
atcagttgatttataatcaataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43192974 |
atcagttgatttataatcaataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaataaaaacagacctaacaacac |
43193073 |
T |
|
| Q |
104 |
gaacaggatagccttttcggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccact |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193074 |
gaacaggatagccttttcggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccact |
43193173 |
T |
|
| Q |
204 |
gagatcccttccaccgcttccggtgtaaaggaaccactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggca |
303 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193174 |
gagatcccttccaccgcttccagtgtaaaggaaccactccccgtgatcttcatcatctatataaccacccgagagagcgacagattgagccccgtgggca |
43193273 |
T |
|
| Q |
304 |
ctctgaccagcaatgccagcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193274 |
ctctgaccagcaatgccagcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcc |
43193373 |
T |
|
| Q |
404 |
tattaggatcatactcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193374 |
tattaggatcatactcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgc |
43193473 |
T |
|
| Q |
504 |
tctctcagtggtgtaacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagc |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193474 |
tctctcagtggtgtaacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagc |
43193573 |
T |
|
| Q |
604 |
ttggccatacggatcgcaatcgccaactgtgcgttgattcttggatt |
650 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43193574 |
ttggccatacggatcgcaatcgccaactgtgcgttgattcttggatt |
43193620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 45 - 651
Target Start/End: Complemental strand, 43194857 - 43194248
Alignment:
| Q |
45 |
aataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctca |
144 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||| ||||| || | ||||||| |
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|
| T |
43194857 |
aataaggaatcaatcaattgaattgaattcataatcaataaaaacggacctaacaacacgaacaggataaccttttcgacaactcagtctgagagcctca |
43194758 |
T |
|
| Q |
145 |
ttcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttccggtgtaaaggaaccactccc |
244 |
Q |
| |
|
||||| || ||||||| || ||||| ||||| |||||||| || |||||||| || |||||||| || || || ||||| ||||||||||||||||| | |
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|
| T |
43194757 |
ttcatgttctcaaactgttgatcaaaagactgatttttgtttgtacgtttattaccgctgagatctctcccgccacttcctgtgtaaaggaaccactcac |
43194658 |
T |
|
| Q |
245 |
cgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagcaacatggggaaaatgagctcc |
344 |
Q |
| |
|
|||| || |||||||| ||||||||||| || || || ||||||||||||||||| | ||||||||||||||||||||| || ||||| || |||||||| |
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|
| T |
43194657 |
cgtggtcctcatcatcgacataaccacctgaaagtgcaacagattgagccccgtgtgtactctgaccagcaatgccagccacgtggggtaagtgagctcc |
43194558 |
T |
|
| Q |
345 |
ccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaaggattggtccaaagtgatcc |
444 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |
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|
| T |
43194557 |
ccattgcctacagtccatcctatcctcccatgtatcaccaacaagaaccccacggttccttgttggatcattctcagcaacaatcggtccaaaatgatct |
43194458 |
T |
|
| Q |
445 |
tttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggtgtcgggacgctcatcgttga |
544 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| || || || |||||||| ||| |
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|
| T |
43194457 |
ttcggaatggtcacaaatatctttccactgcaagcattagcctttcctgttttctttgctctctcagttgtataagcagtatcagggcgctcatcattgt |
43194358 |
T |
|
| Q |
545 |
gaacaacttgataattttttggagcagtgcttccaccgacactctct---gctctagctagcttggccatacggatcgcaatcgccaactgtgcgttgat |
641 |
Q |
| |
|
|||| |||||| ||||||| || | ||||| || |||| || | || |||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43194357 |
caacactgtgataaacttttggaacactacttcctccaacaccaccttgcgaacttgctaccttggccatacgaatcgcaatcgccaactgtgcattgat |
43194258 |
T |
|
| Q |
642 |
tcttggattg |
651 |
Q |
| |
|
|| ||||||| |
|
|
| T |
43194257 |
tcgtggattg |
43194248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 22 - 634
Target Start/End: Complemental strand, 19106077 - 19105463
Alignment:
| Q |
22 |
aataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttc |
121 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||| |||||||||||| |||||||||| | || ||| ||||||| ||||| ||||||| | |||||| |
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|
| T |
19106077 |
aataaaaacagacctaacaaactggcaaggaattcatcagttgaatt-aattcataatgagtaaaaattgacctaaaaacacaaacaggacaaccttttt |
19105979 |
T |
|
| Q |
122 |
ggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgct |
221 |
Q |
| |
|
|||||| || ||||||||| ||||||| ||||||| ||| || || |||||||||||||| || || || || ||||||||||||||||||| || |
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|
| T |
19105978 |
ggcaacatagtcttaaagcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaact |
19105879 |
T |
|
| Q |
222 |
tccggtgtaaaggaaccactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgcca |
321 |
Q |
| |
|
||| || ||||||||||| | || ||||| | ||||| || ||||| || || ||||| ||| |||| || || || | |||| ||||| |||| ||| |
|
|
| T |
19105878 |
tccagtataaaggaaccattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgtgcgccttgagtactcagaccaacaatccca |
19105779 |
T |
|
| Q |
322 |
gcaacatgggga-----aaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcata |
416 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| | ||||||| |||||||||| |
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|
| T |
19105778 |
gcaacatggggaccggaaaatgagctccctattgcctgcattccatcctatccccccaagtatcgccaacaagaacctcgtggttcctgttaggatcat- |
19105680 |
T |
|
| Q |
417 |
ctcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtg |
516 |
Q |
| |
|
||| |||||||||||||||| |||| ||| |||| ||||| |||||||||||||||||||| | | |||| ||| |||| ||||||| || || | | |
|
|
| T |
19105679 |
-tcaacaaggattggtccaaaatgatattttagaattgtcacgaagatttttccactgcaagcttcaaccttccctattttttttgctctatcggtagag |
19105581 |
T |
|
| Q |
517 |
taacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagcttggccatacgga |
616 |
Q |
| |
|
|||| ||||| ||| ||||||| ||| ||||||| ||| | |||||||| ||| ||||||| || |||| ||| | ||||||||||||||||||||| | |
|
|
| T |
19105580 |
aaacaagtgtcaggaagctcatcattgtgaacaacatgaaatttttttggggcaatgcttcctccaacaccctcagatctagctagcttggccatacgaa |
19105481 |
T |
|
| Q |
617 |
tcgcaatcgccaactgtg |
634 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
19105480 |
tcgcaattgccaactgtg |
19105463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 322 - 458
Target Start/End: Complemental strand, 53672118 - 53671982
Alignment:
| Q |
322 |
gcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcag |
421 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||| ||||| |
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|
| T |
53672118 |
gcaatatggggaaaatgagcaccccattgcctgcattccatcctatccttccatttatcaccaacaagaaccccacgattcctagtaggatcattctcag |
53672019 |
T |
|
| Q |
422 |
caaggattggtccaaagtgatcctttggaatagtcac |
458 |
Q |
| |
|
| | ||| |||||||| ||||| |||||||||||||| |
|
|
| T |
53672018 |
ctacgatgggtccaaaatgatcttttggaatagtcac |
53671982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 53672345 - 53672258
Alignment:
| Q |
65 |
aattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctcattcatatt |
152 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
53672345 |
aattgaattcataatcaataaaaacatacctaacaacacgaacaggatagccttttcggcaactgagtcgcaaggcctcattcgtatt |
53672258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 30532598 - 30532553
Alignment:
| Q |
190 |
cgtttattcccactgagatcccttccaccgcttccggtgtaaagga |
235 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30532598 |
cgtttcttaccactgagatcccttccaccacttccggtataaagga |
30532553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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