View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_10 (Length: 668)
Name: NF0063_2D_low_10
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_10
Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 4 - 650
Target Start/End: Original strand, 43192974 - 43193620
Alignment:
Q
4
atcagttgatttataatcaataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacac
103
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
43192974
atcagttgatttataatcaataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaataaaaacagacctaacaacac
43193073
T
Q
104
gaacaggatagccttttcggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccact
203
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43193074
gaacaggatagccttttcggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccact
43193173
T
Q
204
gagatcccttccaccgcttccggtgtaaaggaaccactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggca
303
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
T
43193174
gagatcccttccaccgcttccagtgtaaaggaaccactccccgtgatcttcatcatctatataaccacccgagagagcgacagattgagccccgtgggca
43193273
T
Q
304
ctctgaccagcaatgccagcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcc
403
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43193274
ctctgaccagcaatgccagcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcc
43193373
T
Q
404
tattaggatcatactcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgc
503
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43193374
tattaggatcatactcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgc
43193473
T
Q
504
tctctcagtggtgtaacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagc
603
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43193474
tctctcagtggtgtaacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagc
43193573
T
Q
604
ttggccatacggatcgcaatcgccaactgtgcgttgattcttggatt
650
Q
|||||||||||||||||||||||||||||||||||||||||||||||
T
43193574
ttggccatacggatcgcaatcgccaactgtgcgttgattcttggatt
43193620
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 45 - 651
Target Start/End: Complemental strand, 43194857 - 43194248
Alignment:
Q
45
aataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctca
144
Q
|||||| |||| |||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||| ||||| || | |||||||
T
43194857
aataaggaatcaatcaattgaattgaattcataatcaataaaaacggacctaacaacacgaacaggataaccttttcgacaactcagtctgagagcctca
43194758
T
Q
145
ttcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttccggtgtaaaggaaccactccc
244
Q
||||| || ||||||| || ||||| ||||| |||||||| || |||||||| || |||||||| || || || ||||| ||||||||||||||||| |
T
43194757
ttcatgttctcaaactgttgatcaaaagactgatttttgtttgtacgtttattaccgctgagatctctcccgccacttcctgtgtaaaggaaccactcac
43194658
T
Q
245
cgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagcaacatggggaaaatgagctcc
344
Q
|||| || |||||||| ||||||||||| || || || ||||||||||||||||| | ||||||||||||||||||||| || ||||| || ||||||||
T
43194657
cgtggtcctcatcatcgacataaccacctgaaagtgcaacagattgagccccgtgtgtactctgaccagcaatgccagccacgtggggtaagtgagctcc
43194558
T
Q
345
ccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaaggattggtccaaagtgatcc
444
Q
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || |||||||| |||||
T
43194557
ccattgcctacagtccatcctatcctcccatgtatcaccaacaagaaccccacggttccttgttggatcattctcagcaacaatcggtccaaaatgatct
43194458
T
Q
445
tttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggtgtcgggacgctcatcgttga
544
Q
|| ||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| || || || |||||||| |||
T
43194457
ttcggaatggtcacaaatatctttccactgcaagcattagcctttcctgttttctttgctctctcagttgtataagcagtatcagggcgctcatcattgt
43194358
T
Q
545
gaacaacttgataattttttggagcagtgcttccaccgacactctct---gctctagctagcttggccatacggatcgcaatcgccaactgtgcgttgat
641
Q
|||| |||||| ||||||| || | ||||| || |||| || | || |||| |||||||||||| |||||||||||||||||||| |||||
T
43194357
caacactgtgataaacttttggaacactacttcctccaacaccaccttgcgaacttgctaccttggccatacgaatcgcaatcgccaactgtgcattgat
43194258
T
Q
642
tcttggattg
651
Q
|| |||||||
T
43194257
tcgtggattg
43194248
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 22 - 634
Target Start/End: Complemental strand, 19106077 - 19105463
Alignment:
Q
22
aataaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttc
121
Q
|||||||||||| |||||||||| ||| ||| |||||||||||| |||||||||| | || ||| ||||||| ||||| ||||||| | ||||||
T
19106077
aataaaaacagacctaacaaactggcaaggaattcatcagttgaatt-aattcataatgagtaaaaattgacctaaaaacacaaacaggacaaccttttt
19105979
T
Q
122
ggcaactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgct
221
Q
|||||| || ||||||||| ||||||| ||||||| ||| || || |||||||||||||| || || || || ||||||||||||||||||| ||
T
19105978
ggcaacatagtcttaaagcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaact
19105879
T
Q
222
tccggtgtaaaggaaccactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgcca
321
Q
||| || ||||||||||| | || ||||| | ||||| || ||||| || || ||||| ||| |||| || || || | |||| ||||| |||| |||
T
19105878
tccagtataaaggaaccattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgtgcgccttgagtactcagaccaacaatccca
19105779
T
Q
322
gcaacatgggga-----aaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcata
416
Q
|||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| | ||||||| ||||||||||
T
19105778
gcaacatggggaccggaaaatgagctccctattgcctgcattccatcctatccccccaagtatcgccaacaagaacctcgtggttcctgttaggatcat-
19105680
T
Q
417
ctcagcaaggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtg
516
Q
||| |||||||||||||||| |||| ||| |||| ||||| |||||||||||||||||||| | | |||| ||| |||| ||||||| || || | |
T
19105679
-tcaacaaggattggtccaaaatgatattttagaattgtcacgaagatttttccactgcaagcttcaaccttccctattttttttgctctatcggtagag
19105581
T
Q
517
taacaggtgtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagcttggccatacgga
616
Q
|||| ||||| ||| ||||||| ||| ||||||| ||| | |||||||| ||| ||||||| || |||| ||| | ||||||||||||||||||||| |
T
19105580
aaacaagtgtcaggaagctcatcattgtgaacaacatgaaatttttttggggcaatgcttcctccaacaccctcagatctagctagcttggccatacgaa
19105481
T
Q
617
tcgcaatcgccaactgtg
634
Q
||||||| ||||||||||
T
19105480
tcgcaattgccaactgtg
19105463
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 322 - 458
Target Start/End: Complemental strand, 53672118 - 53671982
Alignment:
Q
322
gcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcag
421
Q
|||| ||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||| |||||
T
53672118
gcaatatggggaaaatgagcaccccattgcctgcattccatcctatccttccatttatcaccaacaagaaccccacgattcctagtaggatcattctcag
53672019
T
Q
422
caaggattggtccaaagtgatcctttggaatagtcac
458
Q
| | ||| |||||||| ||||| ||||||||||||||
T
53672018
ctacgatgggtccaaaatgatcttttggaatagtcac
53671982
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 53672345 - 53672258
Alignment:
Q
65
aattgaattcataataaatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctcattcatatt
152
Q
||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||
T
53672345
aattgaattcataatcaataaaaacatacctaacaacacgaacaggatagccttttcggcaactgagtcgcaaggcctcattcgtatt
53672258
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 30532598 - 30532553
Alignment:
Q
190
cgtttattcccactgagatcccttccaccgcttccggtgtaaagga
235
Q
||||| || |||||||||||||||||||| |||||||| |||||||
T
30532598
cgtttcttaccactgagatcccttccaccacttccggtataaagga
30532553
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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