View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_11 (Length: 586)
Name: NF0063_2D_low_11
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_11
Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 21 - 574
Target Start/End: Original strand, 26861285 - 26861838
Alignment:
Q
21
attggatacatggtatcttaagttgtcatatactcgtatcaattttcaccaagactatgtacagagcaagttgtttaatgaattagcttcaccccttgtc
120
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26861285
attggatacatggtatcttaagttgtcatatactcgtatcaattttcaccaagactatgtacagagcaagttgtttaatgaattagcttcaccccttgtc
26861384
T
Q
121
ccttttgagattagtgttttagttgcttgacctggttcaaggcaagcagaaaaatgtttatgttttagttagccttgttaaggatgttctaagctgctat
220
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26861385
ccttttgagattagtgttttagttgcttgacctggttcaaggcaagcagaaaaatgtttatgttttagttagccttgttaaggatgttctaagctgctat
26861484
T
Q
221
tgtttataagatcatctttatcatgctaagactagcttcaagtatacttgctaaaacttgctggataagtggttcaaacacctaattttatatacatgtg
320
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26861485
tgtttataagatcatctttatcatgctaagactagcttcaagtatacttgctaaaacttgctggataagtggttcaaacacctaattttatatacatgtg
26861584
T
Q
321
taccacatgcaatgacagttagcacacacttctgatttagatttgtagtgtgtttgattatgcggcagaaaggctgtcatctgtatacataaaagctaca
420
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26861585
taccacatgcaatgacagttagcacacacttctgatttagatttgtagtgtgtttgattatgcggcagaaaggctgtcatctgtatacataaaagctaca
26861684
T
Q
421
atatctagcttcaatgtaatcccatatctgcagtattaccatgtgacaccaaacatatgcttagacaatccattttagaggtggtatgatgtcttgttgt
520
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
26861685
atatctagcttcaatgtaatcccatatctgcagtattaccatgtgacaccaaacatatgcttagacaatccattttagaggtggtatgatgtctttttgt
26861784
T
Q
521
atcagaatcaactttatatggtgttcatgcttcatagtagccttccaacaccaa
574
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26861785
atcagaatcaactttatatggtgttcatgcttcatagtagccttccaacaccaa
26861838
T
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