View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_15 (Length: 575)
Name: NF0063_2D_low_15
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 335
Target Start/End: Original strand, 3647420 - 3647738
Alignment:
| Q |
27 |
cctttctgtttggtgtatattgatgcaaagttttgtatgctttcttttggaagcaaggaactca-ttctttcaagggcttgtcccaaatgcaagtatatg |
125 |
Q |
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||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
3647420 |
cctttctgtttggtgtatattcatgcaaagttttccaagatttctttttgaagcaaggaactcaattctttcaagtgcttgtcccaaatgcaagtatatg |
3647519 |
T |
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| Q |
126 |
ccatataatagttccataatttcatgtttttcggtggtttcatgtgtatatcaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacg |
225 |
Q |
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| T |
3647520 |
ccatataatagctccataatttcatgttttccggtggtttcatgtgtatattaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacg |
3647619 |
T |
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| Q |
226 |
tgataagt---------gattacaactaacattcagaaaacaaatggaaatgattcaataattgttgagaaggtagcattacaaatccatttaatttaca |
316 |
Q |
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| T |
3647620 |
tgataagtcattcattacattacaactaacatccagaaaacaaatggaaataattcaatgattgttgagaagggagcattacaaatccatttaatttaca |
3647719 |
T |
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| Q |
317 |
gcaccaaataccaattaga |
335 |
Q |
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| T |
3647720 |
aaaccaaataccaattaga |
3647738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 310 - 557
Target Start/End: Original strand, 3657170 - 3657424
Alignment:
| Q |
310 |
atttacagcaccaaataccaattagacaaagtccaatcaagttc-----------agtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
398 |
Q |
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| T |
3657170 |
atttacagaaccaaataccgattagacagagtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
3657269 |
T |
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| Q |
399 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcctgctctccattttaagtggcaatgcagctgagaacagaagcttctca |
498 |
Q |
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| T |
3657270 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctca |
3657369 |
T |
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| Q |
499 |
tgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgttg |
557 |
Q |
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| T |
3657370 |
tgatgtacctgaaactgctctt----tcagtcaatctccataaccactgctacgcgttg |
3657424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 3655552 - 3655690
Alignment:
| Q |
197 |
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaatgattcaataattgttgagaaggtagcatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
3655552 |
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaataattcaataattgttgagaagggagcatt |
3655651 |
T |
|
| Q |
297 |
acaaatccatttaatttacagcaccaaataccaattaga |
335 |
Q |
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| T |
3655652 |
gcaaatccatttaatttacagaaccaaataccaattaga |
3655690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 557
Target Start/End: Original strand, 3649140 - 3649313
Alignment:
| Q |
371 |
caaatgtaaacaaacaaagccttaaatgataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaa |
466 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| || ||||| ||||| |||| |
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| T |
3649140 |
caaatgtaaacaaacaaagccttacatgataatgttatgacattt-------------tcacacttttactcttcaaatcagttctgctttccatcttaa |
3649226 |
T |
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| Q |
467 |
gtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgttg |
557 |
Q |
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| T |
3649227 |
gtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt----tcactcaatctccataaccactactacgcgttg |
3649313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 497
Target Start/End: Original strand, 3659537 - 3659631
Alignment:
| Q |
407 |
atgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaagtggcaatgcagctgagaacagaagcttctc |
497 |
Q |
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| T |
3659537 |
atgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctc |
3659631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 3653319 - 3653391
Alignment:
| Q |
451 |
ctgctctccattttaagtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttca |
523 |
Q |
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| T |
3653319 |
ctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttca |
3653391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 36164535 - 36164579
Alignment:
| Q |
371 |
caaatgtaaacaaacaaagccttaaatgataattttatgacattt |
415 |
Q |
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| T |
36164535 |
caaatgtaaacaatcaaagccttacatgataatgttatgacattt |
36164579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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