View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_15 (Length: 575)
Name: NF0063_2D_low_15
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_15
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 335
Target Start/End: Original strand, 3647420 - 3647738
Alignment:
Q
27
cctttctgtttggtgtatattgatgcaaagttttgtatgctttcttttggaagcaaggaactca-ttctttcaagggcttgtcccaaatgcaagtatatg
125
Q
||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
T
3647420
cctttctgtttggtgtatattcatgcaaagttttccaagatttctttttgaagcaaggaactcaattctttcaagtgcttgtcccaaatgcaagtatatg
3647519
T
Q
126
ccatataatagttccataatttcatgtttttcggtggtttcatgtgtatatcaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacg
225
Q
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
3647520
ccatataatagctccataatttcatgttttccggtggtttcatgtgtatattaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacg
3647619
T
Q
226
tgataagt---------gattacaactaacattcagaaaacaaatggaaatgattcaataattgttgagaaggtagcattacaaatccatttaatttaca
316
Q
|||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
T
3647620
tgataagtcattcattacattacaactaacatccagaaaacaaatggaaataattcaatgattgttgagaagggagcattacaaatccatttaatttaca
3647719
T
Q
317
gcaccaaataccaattaga
335
Q
|||||||||||||||||
T
3647720
aaaccaaataccaattaga
3647738
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 310 - 557
Target Start/End: Original strand, 3657170 - 3657424
Alignment:
Q
310
atttacagcaccaaataccaattagacaaagtccaatcaagttc-----------agtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg
398
Q
|||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
3657170
atttacagaaccaaataccgattagacagagtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg
3657269
T
Q
399
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcctgctctccattttaagtggcaatgcagctgagaacagaagcttctca
498
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
T
3657270
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctca
3657369
T
Q
499
tgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgttg
557
Q
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
3657370
tgatgtacctgaaactgctctt----tcagtcaatctccataaccactgctacgcgttg
3657424
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 3655552 - 3655690
Alignment:
Q
197
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaatgattcaataattgttgagaaggtagcatt
296
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
T
3655552
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaataattcaataattgttgagaagggagcatt
3655651
T
Q
297
acaaatccatttaatttacagcaccaaataccaattaga
335
Q
|||||||||||||||||||| |||||||||||||||||
T
3655652
gcaaatccatttaatttacagaaccaaataccaattaga
3655690
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 557
Target Start/End: Original strand, 3649140 - 3649313
Alignment:
Q
371
caaatgtaaacaaacaaagccttaaatgataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaa
466
Q
|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| || ||||| ||||| ||||
T
3649140
caaatgtaaacaaacaaagccttacatgataatgttatgacattt-------------tcacacttttactcttcaaatcagttctgctttccatcttaa
3649226
T
Q
467
gtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgttg
557
Q
|||||||| | |||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||
T
3649227
gtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt----tcactcaatctccataaccactactacgcgttg
3649313
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 497
Target Start/End: Original strand, 3659537 - 3659631
Alignment:
Q
407
atgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaagtggcaatgcagctgagaacagaagcttctc
497
Q
|||||||||| || |||| | ||||| || ||||||||||| || ||||| ||||||||||||||||||| ||| |||||||||| ||||||
T
3659537
atgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctc
3659631
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 3653319 - 3653391
Alignment:
Q
451
ctgctctccattttaagtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttca
523
Q
||||| ||||||||||| |||| || ||| |||||||||| |||||| || ||| | ||||||| ||||||||
T
3653319
ctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttca
3653391
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 36164535 - 36164579
Alignment:
Q
371
caaatgtaaacaaacaaagccttaaatgataattttatgacattt
415
Q
||||||||||||| |||||||||| |||||||| |||||||||||
T
36164535
caaatgtaaacaatcaaagccttacatgataatgttatgacattt
36164579
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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