View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_16 (Length: 573)
Name: NF0063_2D_low_16
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 31678678 - 31678247
Alignment:
| Q |
17 |
agtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctct |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31678678 |
agtattattaggttccaataatgtgatctcagaatttgataaagagattttgcaactatgatggccataatatatggttctgtataatggagggtcctct |
31678579 |
T |
|
| Q |
117 |
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatatgaatcacattgaattatgatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31678578 |
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctataatatgaatcacattgaattatgatca |
31678479 |
T |
|
| Q |
217 |
ttcatcaagaataaatagtgtcatagaagaaggnnnnnnnngagaggttttgagtaagttattataagttgaaattgaagataaatacctgaggtatttt |
316 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
31678478 |
ttcatcaagaataaatagtgtcatagaagaaggaaaaaaaagagagattttgagtaagttattataagttgaaattgaatatatatacctgaggtatttt |
31678379 |
T |
|
| Q |
317 |
gcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgctttcgatcttatca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31678378 |
gcattgattatcttcttttgtccatactttctccattcataaccatcttcaatcaaaattgagctatccttctcccaagtaagtgcttttgatcttatca |
31678279 |
T |
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| Q |
417 |
aagtgaaatagtctaccaataaatatcatatt |
448 |
Q |
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|||||||||| ||||||| ||||||||||||| |
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| T |
31678278 |
aagtgaaatactctaccagtaaatatcatatt |
31678247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 31628713 - 31629147
Alignment:
| Q |
17 |
agtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctct |
116 |
Q |
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|||| |||||||||||||||| |||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31628713 |
agtactattaggttccaataatgtgatctctgaatttaataaagaggttttgcaattatgatggccataatatatggttctgtataatggagggtcctct |
31628812 |
T |
|
| Q |
117 |
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatatgaatc----acattgaattatg |
212 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
31628813 |
tgaattctttgcacatgtttcatagctgcacattcttcatcacttttgtaactgcatctgtagtagctcctataatatgaatcatatatattgaattatg |
31628912 |
T |
|
| Q |
213 |
atcattcatcaagaataaatagtgtcat---agaagaaggnnnnnnnngagaggttttgagtaagttattataagttgaaattgaagataaatacctgag |
309 |
Q |
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|| |||||| |||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31628913 |
attattcattaagaattaatagtgtcatagaagaagaagaaaaagagagcgagattttgagtaagttattataagttgaaattgaag----atacctgag |
31629008 |
T |
|
| Q |
310 |
gtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgctttcgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31629009 |
gtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgcttttgat |
31629108 |
T |
|
| Q |
410 |
cttatcaaagtgaaatagtctaccaataaatatcatatt |
448 |
Q |
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|||||||||| |||||||||| ||||||||||||||||| |
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| T |
31629109 |
cttatcaaagagaaatagtcttccaataaatatcatatt |
31629147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 31657265 - 31657175
Alignment:
| Q |
58 |
aagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca |
148 |
Q |
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|||||||||||||| | |||||| |||||||| | || | ||| || ||||||| |||||||||||| || |||||||| || |||||||| |
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| T |
31657265 |
aagagcttttgcaagtgtgatggtcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca |
31657175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 441 - 548
Target Start/End: Original strand, 29464471 - 29464578
Alignment:
| Q |
441 |
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29464471 |
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac |
29464570 |
T |
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| Q |
541 |
ttttcagg |
548 |
Q |
| |
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|||||||| |
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| T |
29464571 |
ttttcagg |
29464578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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