View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_16 (Length: 573)
Name: NF0063_2D_low_16
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_16
Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 31678678 - 31678247
Alignment:
Q
17
agtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctct
116
Q
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31678678
agtattattaggttccaataatgtgatctcagaatttgataaagagattttgcaactatgatggccataatatatggttctgtataatggagggtcctct
31678579
T
Q
117
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatatgaatcacattgaattatgatca
216
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
T
31678578
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctataatatgaatcacattgaattatgatca
31678479
T
Q
217
ttcatcaagaataaatagtgtcatagaagaaggnnnnnnnngagaggttttgagtaagttattataagttgaaattgaagataaatacctgaggtatttt
316
Q
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
T
31678478
ttcatcaagaataaatagtgtcatagaagaaggaaaaaaaagagagattttgagtaagttattataagttgaaattgaatatatatacctgaggtatttt
31678379
T
Q
317
gcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgctttcgatcttatca
416
Q
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
T
31678378
gcattgattatcttcttttgtccatactttctccattcataaccatcttcaatcaaaattgagctatccttctcccaagtaagtgcttttgatcttatca
31678279
T
Q
417
aagtgaaatagtctaccaataaatatcatatt
448
Q
|||||||||| ||||||| |||||||||||||
T
31678278
aagtgaaatactctaccagtaaatatcatatt
31678247
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 31628713 - 31629147
Alignment:
Q
17
agtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctct
116
Q
|||| |||||||||||||||| |||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
31628713
agtactattaggttccaataatgtgatctctgaatttaataaagaggttttgcaattatgatggccataatatatggttctgtataatggagggtcctct
31628812
T
Q
117
tgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatctgtagtagctcctattatatgaatc----acattgaattatg
212
Q
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
T
31628813
tgaattctttgcacatgtttcatagctgcacattcttcatcacttttgtaactgcatctgtagtagctcctataatatgaatcatatatattgaattatg
31628912
T
Q
213
atcattcatcaagaataaatagtgtcat---agaagaaggnnnnnnnngagaggttttgagtaagttattataagttgaaattgaagataaatacctgag
309
Q
|| |||||| |||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||
T
31628913
attattcattaagaattaatagtgtcatagaagaagaagaaaaagagagcgagattttgagtaagttattataagttgaaattgaag----atacctgag
31629008
T
Q
310
gtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgctttcgat
409
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
31629009
gtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaattgagctatccttctcccaagtaagtgcttttgat
31629108
T
Q
410
cttatcaaagtgaaatagtctaccaataaatatcatatt
448
Q
|||||||||| |||||||||| |||||||||||||||||
T
31629109
cttatcaaagagaaatagtcttccaataaatatcatatt
31629147
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 31657265 - 31657175
Alignment:
Q
58
aagagcttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca
148
Q
|||||||||||||| | |||||| |||||||| | || | ||| || ||||||| |||||||||||| || |||||||| || ||||||||
T
31657265
aagagcttttgcaagtgtgatggtcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca
31657175
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 441 - 548
Target Start/End: Original strand, 29464471 - 29464578
Alignment:
Q
441
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac
540
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29464471
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac
29464570
T
Q
541
ttttcagg
548
Q
||||||||
T
29464571
ttttcagg
29464578
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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