View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_18 (Length: 572)
Name: NF0063_2D_low_18
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_18
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 22634159 - 22634528
Alignment:
Q
17
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg
116
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22634159
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg
22634258
T
Q
117
caaaatcattgagggtcttgctaacgagtgtattaaagacatttattaaagaaatcaaatgtacatctattacattggaaacacaacatttgaaaaagtt
216
Q
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
T
22634259
caaaatcgttcagggtcttgataacgagtgtattaaagacatttattaaagaaatcaaatgtacaccttttacat--------------ttgaaaaagtt
22634344
T
Q
217
gaatacacaattttccaatataaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc
316
Q
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22634345
gaatacacaattttccaatgtaaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc
22634444
T
Q
317
tcaacacaaaatttcaaacttctcagttgctttttgggtggtgtgtgttttgcttttatcaggaaaaagcaagtgaaatgatac
400
Q
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
T
22634445
tcaacacaaaatttcaaacttctcagttgcttttttggtggtgagtgttttgcttttatcaggaaaaagcaagtgaaatgatac
22634528
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 556
Target Start/End: Original strand, 22634613 - 22634684
Alignment:
Q
485
aacaggaaaaagcagagtgctttgcatcnnnnnnnnctactttaattaaaactcttccactcgttacttttg
556
Q
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
22634613
aacaggaaaaagcagagtgctttgcatcttttttttctactttaattaaaactcttccactcgttacttttg
22634684
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 45418894 - 45418851
Alignment:
Q
209
aaaaagttgaatacacaattttccaatataaaatttctatattt
252
Q
|||||||||||||||||||||||||| | ||||||| |||||||
T
45418894
aaaaagttgaatacacaattttccaacacaaaatttatatattt
45418851
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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