View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_20 (Length: 536)
Name: NF0063_2D_low_20
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_20
Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 24531051 - 24531569
Alignment:
Q
1
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
24531051
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta
24531150
T
Q
101
tcttccatggtggtattgtattggtgtttaaggtatggtttgtagcataattttgtttatataaatacatatgagatgagtcaattggcatttgggttgg
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
T
24531151
tcttccatggtggtattgtattggtgtttaaggtatggtttgtagcataattttgtttatatacatac--atgagatgagtcaattggcatttgggttgg
24531248
T
Q
201
gtatattttaatacgattaagatgattatgaatattctttaaaagaaaatgattatggatttatctatatttgaacacctgaaaatcgtaatctatgtca
300
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
T
24531249
gtatattttaatacgattaagatgattatgaatattctttaaaagaaaatgattatggatttatctatatttgaacacatgaaaatcgtaatctatgtca
24531348
T
Q
301
gtcaaaatcgtagatataatatatgtcttgtaagcagatcgaagttagcagctgcaaggacaaaattatgcatggatcagggtttaaaccctagactccc
400
Q
||||||||| | |||||| |||||||||||||||| || | |||||| ||||||||||| ||||||||||||||||||| |||| || | |||||||||
T
24531349
gtcaaaatcatggatata--atatgtcttgtaagcacatggcagttagtagctgcaaggataaaattatgcatggatcagagtttgaatcatagactccc
24531446
T
Q
401
catttcctcatatttaaaatatgtgaaccccgatcactagactacttgaccaaaaacaaaaattatggttggatgtgttcaattgattattaatgagttg
500
Q
||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||
T
24531447
cattttcccatatttaaaatgtgtgaaccccgatcactagactacttgactaaaaacaaaaattatggttgcatgtgttcaattaattattaatgagttg
24531546
T
Q
501
cgacaacttgtctaatttgatgtc
524
Q
||||||||| |||||||||||||
T
24531547
cgacaactt-cctaatttgatgtc
24531569
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 24542832 - 24542706
Alignment:
Q
1
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta
100
Q
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |
T
24542832
gtgacccttttgagctatgagtttggaaagctcaaagaatggacttatgtgaccaaatgcaagccatggaaaaacagcaatgtgaagtttcttaggatca
24542733
T
Q
101
tcttccatggtggtattgtattggtgt
127
Q
|||||||| ||||||||||||||||||
T
24542732
tcttccattgtggtattgtattggtgt
24542706
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 1722079 - 1722001
Alignment:
Q
4
acccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatg
82
Q
|||||||| |||| |||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||
T
1722079
acccttttgagctgagagtttggaaagcttgaagaatggcgttatgtgaccaaaagcaagtcatggaaaaacagcaatg
1722001
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 1717384 - 1717298
Alignment:
Q
4
acccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaactt
90
Q
|||||||| ||||| |||||| ||||| | |||||||| |||||||||| |||| |||| || |||||||| |||||||||||||
T
1717384
acccttttgagctaagagtttggaaaggttgaagaatggtgttatgtgacctaaagaaagcaatagaaaaacaacaatgtgaaactt
1717298
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 33248794 - 33248766
Alignment:
Q
434
tcactagactacttgaccaaaaacaaaaa
462
Q
|||||||||||||||||||||||||||||
T
33248794
tcactagactacttgaccaaaaacaaaaa
33248766
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 41814811 - 41814773
Alignment:
Q
409
catatttaaaatatgtgaaccccgatcactagactactt
447
Q
|||||||||||||||||||| || |||||||||||||||
T
41814811
catatttaaaatatgtgaactccaatcactagactactt
41814773
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 50578579 - 50578685
Alignment:
Q
350
agctgcaaggacaaaattatgcatggatcagggtttaaaccctagactccccatttcctcatatttaaaatatgtgaaccccgatcactagactacttga
449
Q
|||| ||||||||| |||||||| || || || || ||||| ||||| |||| ||| || ||||||||| |||||||||| |||||| ||||||||
T
50578579
agctacaaggacaatattatgcaggggtcgggattcgaaccccagactacccacttctacacatttaaaatgtgtgaaccccagccactaggctacttga
50578678
T
Q
450
ccaaaaa
456
Q
|||||||
T
50578679
ccaaaaa
50578685
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 456
Target Start/End: Original strand, 55494757 - 55494814
Alignment:
Q
399
cccatttcctcatatttaaaatatgtgaaccccgatcactagactacttgaccaaaaa
456
Q
|||| ||| ||||||||||||||||||| | || | |||||| |||||||||||||||
T
55494757
cccacttcttcatatttaaaatatgtgagctccaaccactaggctacttgaccaaaaa
55494814
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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