View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_20 (Length: 536)
Name: NF0063_2D_low_20
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 24531051 - 24531569
Alignment:
| Q |
1 |
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24531051 |
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta |
24531150 |
T |
|
| Q |
101 |
tcttccatggtggtattgtattggtgtttaaggtatggtttgtagcataattttgtttatataaatacatatgagatgagtcaattggcatttgggttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
24531151 |
tcttccatggtggtattgtattggtgtttaaggtatggtttgtagcataattttgtttatatacatac--atgagatgagtcaattggcatttgggttgg |
24531248 |
T |
|
| Q |
201 |
gtatattttaatacgattaagatgattatgaatattctttaaaagaaaatgattatggatttatctatatttgaacacctgaaaatcgtaatctatgtca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24531249 |
gtatattttaatacgattaagatgattatgaatattctttaaaagaaaatgattatggatttatctatatttgaacacatgaaaatcgtaatctatgtca |
24531348 |
T |
|
| Q |
301 |
gtcaaaatcgtagatataatatatgtcttgtaagcagatcgaagttagcagctgcaaggacaaaattatgcatggatcagggtttaaaccctagactccc |
400 |
Q |
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||||||||| | |||||| |||||||||||||||| || | |||||| ||||||||||| ||||||||||||||||||| |||| || | ||||||||| |
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| T |
24531349 |
gtcaaaatcatggatata--atatgtcttgtaagcacatggcagttagtagctgcaaggataaaattatgcatggatcagagtttgaatcatagactccc |
24531446 |
T |
|
| Q |
401 |
catttcctcatatttaaaatatgtgaaccccgatcactagactacttgaccaaaaacaaaaattatggttggatgtgttcaattgattattaatgagttg |
500 |
Q |
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| T |
24531447 |
cattttcccatatttaaaatgtgtgaaccccgatcactagactacttgactaaaaacaaaaattatggttgcatgtgttcaattaattattaatgagttg |
24531546 |
T |
|
| Q |
501 |
cgacaacttgtctaatttgatgtc |
524 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
24531547 |
cgacaactt-cctaatttgatgtc |
24531569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 24542832 - 24542706
Alignment:
| Q |
1 |
gtgacccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaacttcttagggtta |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | | |
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| T |
24542832 |
gtgacccttttgagctatgagtttggaaagctcaaagaatggacttatgtgaccaaatgcaagccatggaaaaacagcaatgtgaagtttcttaggatca |
24542733 |
T |
|
| Q |
101 |
tcttccatggtggtattgtattggtgt |
127 |
Q |
| |
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|||||||| |||||||||||||||||| |
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|
| T |
24542732 |
tcttccattgtggtattgtattggtgt |
24542706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 1722079 - 1722001
Alignment:
| Q |
4 |
acccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatg |
82 |
Q |
| |
|
|||||||| |||| |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1722079 |
acccttttgagctgagagtttggaaagcttgaagaatggcgttatgtgaccaaaagcaagtcatggaaaaacagcaatg |
1722001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 1717384 - 1717298
Alignment:
| Q |
4 |
acccttttcagctatgagtttagaaagctcaaagaatggacttatgtgaccaaaagcaagccatggaaaaacagcaatgtgaaactt |
90 |
Q |
| |
|
|||||||| ||||| |||||| ||||| | |||||||| |||||||||| |||| |||| || |||||||| ||||||||||||| |
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|
| T |
1717384 |
acccttttgagctaagagtttggaaaggttgaagaatggtgttatgtgacctaaagaaagcaatagaaaaacaacaatgtgaaactt |
1717298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 33248794 - 33248766
Alignment:
| Q |
434 |
tcactagactacttgaccaaaaacaaaaa |
462 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
33248794 |
tcactagactacttgaccaaaaacaaaaa |
33248766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 41814811 - 41814773
Alignment:
| Q |
409 |
catatttaaaatatgtgaaccccgatcactagactactt |
447 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |
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| T |
41814811 |
catatttaaaatatgtgaactccaatcactagactactt |
41814773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 50578579 - 50578685
Alignment:
| Q |
350 |
agctgcaaggacaaaattatgcatggatcagggtttaaaccctagactccccatttcctcatatttaaaatatgtgaaccccgatcactagactacttga |
449 |
Q |
| |
|
|||| ||||||||| |||||||| || || || || ||||| ||||| |||| ||| || ||||||||| |||||||||| |||||| |||||||| |
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| T |
50578579 |
agctacaaggacaatattatgcaggggtcgggattcgaaccccagactacccacttctacacatttaaaatgtgtgaaccccagccactaggctacttga |
50578678 |
T |
|
| Q |
450 |
ccaaaaa |
456 |
Q |
| |
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||||||| |
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|
| T |
50578679 |
ccaaaaa |
50578685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 456
Target Start/End: Original strand, 55494757 - 55494814
Alignment:
| Q |
399 |
cccatttcctcatatttaaaatatgtgaaccccgatcactagactacttgaccaaaaa |
456 |
Q |
| |
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|||| ||| ||||||||||||||||||| | || | |||||| ||||||||||||||| |
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| T |
55494757 |
cccacttcttcatatttaaaatatgtgagctccaaccactaggctacttgaccaaaaa |
55494814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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