View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_23 (Length: 512)

Name: NF0063_2D_low_23
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_23
NF0063_2D_low_23
[»] chr2 (1 HSPs)
chr2 (9-489)||(14768695-14769175)
[»] chr8 (9 HSPs)
chr8 (159-437)||(7166591-7166869)
chr8 (159-315)||(3269111-3269267)
chr8 (129-348)||(31173812-31174031)
chr8 (159-295)||(3264453-3264589)
chr8 (164-315)||(3288384-3288535)
chr8 (220-433)||(3400608-3400821)
chr8 (235-313)||(13806935-13807013)
chr8 (215-312)||(13785638-13785735)
chr8 (210-310)||(3409295-3409395)
[»] chr5 (3 HSPs)
chr5 (160-310)||(30415929-30416079)
chr5 (233-436)||(20836335-20836538)
chr5 (233-436)||(20809980-20810183)
[»] chr3 (2 HSPs)
chr3 (152-289)||(32412883-32413020)
chr3 (177-279)||(6907789-6907891)
[»] scaffold0468 (1 HSPs)
scaffold0468 (191-298)||(8209-8316)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 14768695 - 14769175
Alignment:
Q  9 acatcatcaagtacaatgaatacctttttccctctaagtcttgtctccaacttatttgctcccaacccaatgctatctatcttctcctttgttttcaggg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14768695 acatcatcaagtacaatgaatacctttttccctctaagtcttgtctccaacttatttgctcccaacccaatactatctatcttctcctttgttttcaggg 14768794  T
Q  109 catctgaaagaannnnnnnctgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaactt 208  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14768795 catctgaaagaatttttttctgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaactt 14768894  T
Q  209 gcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttca 308  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14768895 gcgatgaattcgattgtagatggatttggctgtggttgttttaccagatccacccattccctagatccctatcatacaaacattgcttgaatgtttttca 14768994  T
Q  309 ataaactcggcaactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaa 408  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14768995 ataaactcggccactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccgacaa 14769094  T
Q  409 tttgctttactagttcaccttcattccttagataattataaaacacaaaacaacacaacacatagaatgagaataaattac 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769095 tttgctttactagttcaccttcattccttagataattataaaacacaaaacaacacaacacatagaatgagaataaattac 14769175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 159 - 437
Target Start/End: Original strand, 7166591 - 7166869
Alignment:
Q  159 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 258  Q
    ||||||||  ||||||| |  ||||||| ||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||||||||||||| || |    
T  7166591 ttttcacatacttctctaacgttttcaatgaaacttctattcaaaaatttgcgatgaatttgattatagatggctttggctgtggttgttttacccgacc 7166690  T
Q  259 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcacacgaggttccaacccaactgggaactc 358  Q
      ||||||||||| ||||||||||||||||| |||||||  ||  || ||||||| ||   |||||| ||||  |||| |||||| |||||||| || ||    
T  7166691 tgcccattccccatatccctatcatacaaactttgcttggctgagttgcaataaattcaataactttgtgcatgcgagattccaatccaactggaaattc 7166790  T
Q  359 ggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcattcctt 437  Q
    |  ||||||||   |||   ||||||||||||  ||||  ||  ||||||||||||  ||||||||| ||||| |||||    
T  7166791 gataatagacaaggatgcgttgtctagttttgccaaaagatcctcaacaatttgctgcactagttcagcttcactcctt 7166869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 3269111 - 3269267
Alignment:
Q  159 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 258  Q
    |||||| || ||||||| |||||||||| ||||||   ||  ||||| ||||||||||||   || |||||   | ||||||| ||||||||||| ||||    
T  3269111 ttttcataaacttctctaatattttcaatgaaactgtgatctacaaatttgcgatgaattttgttgtagatatctctggctgttgttgttttacctgatc 3269210  T
Q  259 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 315  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  3269211 cacccataccccagatccctatcatgcaaactttgcttgattgtttttcaataaact 3269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 348
Target Start/End: Complemental strand, 31174031 - 31173812
Alignment:
Q  129 tgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaactt---ctatgcacaaacttgcgatgaattcgattat 225  Q
    ||||||||||||||||||||| |||||| ||   ||||| ||||||  ||| |||||| |||||||   |||    ||||| | ||||| |||  ||| |    
T  31174031 tgtaaatgaataacccctctagaattattat---cacaaacttctcgaatactttcaaagaaacttgttctaccttcaaacctacgatggattttattgt 31173935  T
Q  226 agatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaacttt 325  Q
    |||| | |||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||| |||| || || |||||||||| || || |||    
T  31173934 agatagctttggctgtggttgttttcccggatccacccattccccatatccctatcatgcagactttgtttgattgattatcaataaacttggtaatttt 31173835  T
Q  326 ttgcacacgaggttccaacccaa 348  Q
    ||||||||| | |||||| ||||    
T  31173834 ttgcacacgggattccaatccaa 31173812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 3264453 - 3264589
Alignment:
Q  159 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 258  Q
    |||||| || ||||||| |||||||| | ||||||| ||| | |||| |||||||| ||| | || |||| || |||||||||||||||||||||  | |    
T  3264453 ttttcataaacttctctaatattttcgatgaaacttttatcctcaaatttgcgatggatttggttgtagacggctttggctgtggttgttttacccaacc 3264552  T
Q  259 cacccattccccagatccctatcatacaaacattgct 295  Q
    ||||||||||||| || || ||||||||||| |||||    
T  3264553 cacccattccccatattcccatcatacaaactttgct 3264589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 3288384 - 3288535
Alignment:
Q  164 acaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccaccc 263  Q
    |||| ||||||| |||||||||| |||||||  ||||| ||| ||   || |||| ||||  |||| | ||||||||| |||||||| || || ||||||    
T  3288384 acaaacttctctaatattttcaatgaaacttgcatgcataaatttcaaattaatttgattgaagatagctttggctgttgttgttttccccgacccaccc 3288483  T
Q  264 attccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 315  Q
    ||||||||||||||| ||| |||||| |||||||| || |||| ||||||||    
T  3288484 attccccagatccctgtcaaacaaactttgcttgattgattttgaataaact 3288535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 433
Target Start/End: Original strand, 3400608 - 3400821
Alignment:
Q  220 gattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggc 319  Q
    |||| ||||| | |||||| ||||||||||| || ||||||||||||||||| |||||||||||||| || |   |||| || |  |||||||||| ||     
T  3400608 gattgtagatagctttggccgtggttgttttcccggatccacccattccccatatccctatcatacagacttctgttgattgatgatcaataaacttggt 3400707  T
Q  320 aactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttact 419  Q
    || || ||||||||| |  ||||| ||||| ||  | || | ||||||||  |||||  | ||||||||||  |||  |||  ||||||||||||| |||    
T  3400708 aatttgttgcacacgggaatccaatccaaccggatattcagtaatagacaacaatgagatatctagttttgccaaagtgtcctcaacaatttgcttcact 3400807  T
Q  420 agttcaccttcatt 433  Q
    ||||||||||||||    
T  3400808 agttcaccttcatt 3400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 13807013 - 13806935
Alignment:
Q  235 tggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaa 313  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||||| |||||||| || |||| ||||||    
T  13807013 tggctgttgttgttttacctgatccacccatcccccagatccctatcaagcaaactttgcttgattgatttttaataaa 13806935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 13785735 - 13785638
Alignment:
Q  215 aattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataa 312  Q
    |||| |||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||| ||    ||||||||| |||| || ||||||||||    
T  13785735 aatttgattgtagatggctttggctgtggttgttttccccgatccacccataccccagatccccatagagcaaacattgtttgattgattttcaataa 13785638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 3409295 - 3409395
Alignment:
Q  210 cgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaa 309  Q
    |||||||||  ||| ||||||| |||||||   ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||  |||||||| ||||    
T  3409295 cgatgaatttcattgtagatggctttggctacagttgttttacctgatcctcccatgccccagatccctaccatacaaacatcgcccgaatgtttctcaa 3409394  T
Q  310 t 310  Q
    |    
T  3409395 t 3409395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 30416079 - 30415929
Alignment:
Q  160 tttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatcc 259  Q
    ||||||||| |||||| |||||||| | ||||||||| | |||||| |||||||||||| |||| ||||||| ||||||||  || ||||||||  | ||    
T  30416079 tttcacaagtttctctaatattttcgatgaaacttctgtacacaaatttgcgatgaatttgattgtagatggctttggctgccgtagttttacccaaccc 30415980  T
Q  260 acccattccccagatccctatcatacaaacattgcttgaatgtttttcaat 310  Q
     ||||||||||| || |||||||||||||| ||  ||||||  ||||||||    
T  30415979 tcccattccccatatgcctatcatacaaacctttgttgaattattttcaat 30415929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 436
Target Start/End: Complemental strand, 20836538 - 20836335
Alignment:
Q  233 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 332  Q
    |||||| ||||||||||| ||  |||||||||||||||| |||||||| ||||| || |||| ||| || |  ||||||| || || || || |||||||    
T  20836538 tttggccgtggttgttttgcctaatccacccattccccatatccctatgatacagactttgcatgattgatcatcaataatcttggtaatttgttgcaca 20836439  T
Q  333 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 432  Q
     | | |||||| ||||  || || || | ||||||||  |||||  | ||||||||| | |||| |||  |||||||| |||  ||||||||||||||||    
T  20836438 tgggattccaatccaatcggaaattcagtaatagacaacaatgagatatctagttttctcaaaatgtcctcaacaattagctccactagttcaccttcat 20836339  T
Q  433 tcct 436  Q
    ||||    
T  20836338 tcct 20836335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 436
Target Start/End: Complemental strand, 20810183 - 20809980
Alignment:
Q  233 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 332  Q
    |||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| || || | ||| || |  ||||||| || || || || |||||||    
T  20810183 tttggccgtggttgttttgcctgatccacccattccccatatccctatgatacagactttccatgattgatcatcaataatcttggtaatttgttgcaca 20810084  T
Q  333 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 432  Q
    || | |||||| |||| |||  | || | ||||||||  |||||  | | ||||||||| |||| ||   |||||||   ||| ||||||||||||||||    
T  20810083 cgggattccaatccaattggatattcagtaatagacaacaatgagatatttagttttgtcaaaatgtactcaacaatacccttcactagttcaccttcat 20809984  T
Q  433 tcct 436  Q
    ||||    
T  20809983 tcct 20809980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 32412883 - 32413020
Alignment:
Q  152 attatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgtttta 251  Q
    |||||| ||||||||   |||||| || ||||||| ||| |||||||   |||| |||||||  ||| |||||||||||| ||| |||||||||||||||    
T  32412883 attatccttttcacagatttctctaatgttttcaatgaagcttctatctgcaaatttgcgattgatttgattatagatggcttttgctgtggttgtttta 32412982  T
Q  252 ccagatccacccattccccagatccctatcatacaaac 289  Q
    || ||||| ||||||||||| ||||||||||| |||||    
T  32412983 cctgatccccccattccccaaatccctatcatgcaaac 32413020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 6907789 - 6907891
Alignment:
Q  177 atattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatcc 276  Q
    ||||| |||| |||||||||||||||||| ||||||||||||  ||| ||||||  |||||||||||| ||||||||  | || ||||||||||| ||||    
T  6907789 atattctcaatgaaacttctatgcacaaatttgcgatgaattttattgtagatgcctttggctgtggtagttttacccaacccgcccattccccaaatcc 6907888  T
Q  277 cta 279  Q
    |||    
T  6907889 cta 6907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 8209 - 8316
Alignment:
Q  191 acttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaaca 290  Q
    ||||||||||||||||||| ||||||||  ||| ||||    ||||||| |||| ||||||||  | || ||||| ||||||||||||| |||  ||||     
T  8209 acttctatgcacaaacttgtgatgaattttattgtagacacctttggctatggtagttttacccaacccgcccatgccccagatccctaccatggaaact 8308  T
Q  291 ttgcttga 298  Q
    ||||||||    
T  8309 ttgcttga 8316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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