View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_24 (Length: 464)

Name: NF0063_2D_low_24
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_24
NF0063_2D_low_24
[»] chr3 (3 HSPs)
chr3 (170-442)||(202428-202700)
chr3 (253-442)||(206482-206672)
chr3 (15-136)||(202737-202858)
[»] chr4 (5 HSPs)
chr4 (170-442)||(6908287-6908558)
chr4 (221-442)||(44924311-44924532)
chr4 (253-413)||(6901694-6901855)
chr4 (15-118)||(6908120-6908223)
chr4 (108-136)||(6908225-6908253)
[»] chr1 (4 HSPs)
chr1 (278-439)||(29514629-29514790)
chr1 (355-439)||(43626332-43626417)
chr1 (247-351)||(43632255-43632354)
chr1 (221-305)||(43997814-43997903)
[»] chr7 (1 HSPs)
chr7 (351-442)||(24652944-24653035)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 170 - 442
Target Start/End: Complemental strand, 202700 - 202428
Alignment:
Q  170 ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202700 ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 202601  T
Q  270 aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaa 369  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  202600 caaaacaagcaatatcaaacagctaaataatattctcttacacagagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaa 202501  T
Q  370 acttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacaggg 442  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  202500 acttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatttcctcacacaataaacaggg 202428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 253 - 442
Target Start/End: Original strand, 206482 - 206672
Alignment:
Q  253 atacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatc 352  Q
    |||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||     
T  206482 atacacggatataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaagtaaaaggttcaattataacaaagatcatt 206581  T
Q  353 -aaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacaggg 442  Q
     |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  206582 taaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcaagcaaagatttcctcacacaataaacaggg 206672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 202858 - 202737
Alignment:
Q  15 atgaaaatgataaagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  202858 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaactttagaatttagaatcaaacatatt 202759  T
Q  115 tccttccttaatttagaatcaa 136  Q
    ||||||||||||||||||||||    
T  202758 tccttccttaatttagaatcaa 202737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 170 - 442
Target Start/End: Original strand, 6908287 - 6908558
Alignment:
Q  170 ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 269  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908287 ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 6908386  T
Q  270 aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaa 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6908387 aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaa 6908486  T
Q  370 acttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacaggg 442  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6908487 ac-taatacttagaaaagaaaagatcaaaaacaacatgtcttgagcaaagatttcctcacacaataaacaggg 6908558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 221 - 442
Target Start/End: Original strand, 44924311 - 44924532
Alignment:
Q  221 atgaagcatagttggatcaaagtttcggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatc 320  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  44924311 atgaagcatagttggatcaaagtttcggttggatacacaggtataccatcaaaataagcaatatcaaacagctaaataatattctcttacacgcagcatc 44924410  T
Q  321 aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaaga 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  44924411 aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaggataaaaaacaacatgtctcgagcaaaga 44924510  T
Q  421 tttcctcacacaataaacaggg 442  Q
    ||||||||||||||||||||||    
T  44924511 tttcctcacacaataaacaggg 44924532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 253 - 413
Target Start/End: Complemental strand, 6901855 - 6901694
Alignment:
Q  253 atacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatca-t 351  Q
    |||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| | |    
T  6901855 atacacggatataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaggtaaaaggttcaattataacaaagataatt 6901756  T
Q  352 caaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcga 413  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  6901755 caaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcga 6901694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 6908120 - 6908223
Alignment:
Q  15 atgaaaatgataaagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908120 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt 6908219  T
Q  115 tcct 118  Q
    ||||    
T  6908220 tcct 6908223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 6908225 - 6908253
Alignment:
Q  108 acatatttccttccttaatttagaatcaa 136  Q
    |||||||||||||||||||||||||||||    
T  6908225 acatatttccttccttaatttagaatcaa 6908253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 278 - 439
Target Start/End: Complemental strand, 29514790 - 29514629
Alignment:
Q  278 gcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaata 377  Q
    |||| ||||||| |||||||||||| ||| |||| ||  ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||    
T  29514790 gcaaaatcaaactgctaaataatatactcatacaaactccattaagtaaaaggttcaattatcataaagatcatcaaatgtattggagcaaaactctata 29514691  T
Q  378 cttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaaca 439  Q
    ||| ||||||||||| | ||||| ||||| |||||||||||||||| ||| |||||||||||    
T  29514690 cttggaaaagaaaagctcaaaaagaacatctctcgagcaaagatttactcgcacaataaaca 29514629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 43626417 - 43626332
Alignment:
Q  355 atgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctc-gagcaaagatttcctcacacaataaaca 439  Q
    ||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||| ||| ||||||||||| ||||||||||||    
T  43626417 atgtattggagcaaaacttaatatttggaaaagaagagataaaaaacaacacgtctctgagaaaagatttccttacacaataaaca 43626332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 43632354 - 43632255
Alignment:
Q  247 ggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaag 346  Q
    ||||||||||||||||||||||| |||| | |||| ||||||| ||||| || |     |||||| ||| ||||||||||||||||||||||||||||||    
T  43632354 ggttggatacacgggtataccatcaaaatatgcaaaatcaaactgctaactatt-----cttacatacaacatcaagtaaaaggttcaattatcacaaag 43632260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 43997814 - 43997903
Alignment:
Q  221 atgaagcatagttggatcaaagtttcggttgg----atacacggg-tataccataaaaacaagcaatatcaaacagctaaataatattct 305  Q
    ||||||||||||||  ||||||||| ||||||    ||||||||| |||||||| |||| | |||| ||||||| |||||||||||||||    
T  43997814 atgaagcatagttgattcaaagttttggttggttggatacacggggtataccatcaaaatatgcaaaatcaaactgctaaataatattct 43997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 24653035 - 24652944
Alignment:
Q  351 tcaaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacaggg 442  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||    
T  24653035 tcaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgttttgagcaaagatttcctcacacaataaacaggg 24652944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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