View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_27 (Length: 464)
Name: NF0063_2D_low_27
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_27
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 72 - 448
Target Start/End: Original strand, 11035017 - 11035405
Alignment:
Q
72
caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcattgttctcgtttttc
171
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
11035017
caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcgttgttctcgtttttc
11035116
T
Q
172
aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattggcacgga
271
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
11035117
aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattggcacgga
11035216
T
Q
272
atctggaaatattattttaaagtagtactatattaggtaaaagaacatttatgaattatccttcttgcttatctgc------------ttgtttgtttgt
359
Q
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
T
11035217
atctgcaagcattattttaaagtagtactatatcaggtaaaagaacatttatgaattatccttcttgcttatctgcttgtttgtttgtttgtttgtttgt
11035316
T
Q
360
acgtatgtttgtttgttttattattcaaatgtcatgaatttcttaccaattgtaattaattaatcaatcattacagtaatcttatttta
448
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
11035317
ttgtatgtttgtttgttttattattcaaatgtcatgaatttcttaccaattgtaattaattaatcaatcattacagtaatctcatttta
11035405
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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