View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_28 (Length: 454)

Name: NF0063_2D_low_28
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_28
NF0063_2D_low_28
[»] chr3 (30 HSPs)
chr3 (184-454)||(9838016-9838286)
chr3 (184-454)||(9848894-9849164)
chr3 (185-282)||(10031107-10031204)
chr3 (370-454)||(10376489-10376573)
chr3 (190-282)||(10126053-10126145)
chr3 (185-282)||(9837812-9837907)
chr3 (185-282)||(9848690-9848785)
chr3 (374-454)||(10364442-10364522)
chr3 (388-454)||(10505144-10505210)
chr3 (185-282)||(11768397-11768494)
chr3 (95-163)||(10030921-10030989)
chr3 (374-454)||(10076611-10076691)
chr3 (95-163)||(10125872-10125940)
chr3 (374-454)||(10434688-10434768)
chr3 (185-286)||(10657912-10658010)
chr3 (374-454)||(10579947-10580026)
chr3 (185-282)||(10662627-10662721)
chr3 (107-163)||(10259657-10259713)
chr3 (364-440)||(11768569-11768645)
chr3 (205-272)||(10259863-10259930)
chr3 (211-282)||(10076299-10076370)
chr3 (199-247)||(10516626-10516674)
chr3 (394-454)||(13160345-13160405)
chr3 (394-454)||(13170396-13170456)
chr3 (394-454)||(13332269-13332329)
chr3 (394-454)||(13289030-13289090)
chr3 (394-454)||(13343454-13343514)
chr3 (184-217)||(10434963-10434996)
chr3 (185-217)||(10183369-10183401)
chr3 (1-53)||(10219869-10219921)
[»] scaffold0083 (2 HSPs)
scaffold0083 (197-282)||(50705-50790)
scaffold0083 (358-454)||(50449-50545)
[»] chr8 (1 HSPs)
chr8 (394-454)||(44958322-44958382)
[»] chr2 (1 HSPs)
chr2 (381-454)||(26906249-26906322)
[»] scaffold0002 (2 HSPs)
scaffold0002 (394-454)||(136532-136592)
scaffold0002 (394-454)||(146583-146643)
[»] chr5 (2 HSPs)
chr5 (394-439)||(19956982-19957027)
chr5 (1-53)||(26799340-26799392)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 184 - 454
Target Start/End: Original strand, 9838016 - 9838286
Alignment:
Q  184 ttttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagctttt 283  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9838016 ttttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagctttt 9838115  T
Q  284 aaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttcatactacctgatttgctttta 383  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838116 caaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttcatactacctgatttgctttta 9838215  T
Q  384 caagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9838216 caagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagt 9838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 184 - 454
Target Start/End: Original strand, 9848894 - 9849164
Alignment:
Q  184 ttttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagctttt 283  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9848894 ttttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagctttt 9848993  T
Q  284 aaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttcatactacctgatttgctttta 383  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9848994 caaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttcatactacctgatttgctttta 9849093  T
Q  384 caagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9849094 caagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagt 9849164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 10031107 - 10031204
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10031107 tttagttgagtgtggaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 10376573 - 10376489
Alignment:
Q  370 ctgatttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10376573 ctgatttgcttttacaagatcaacagaagatggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagt 10376489  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 10126053 - 10126145
Alignment:
Q  190 ttgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10126053 ttgagtgtgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 9837812 - 9837907
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9837812 tttaattgagtgtgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 9848690 - 9848785
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9848690 tttaattgagtgtgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 10364522 - 10364442
Alignment:
Q  374 tttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10364522 tttgctttaacaatatcaacagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagt 10364442  T

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Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 10505144 - 10505210
Alignment:
Q  388 atcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  10505144 atcaacagaagatggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagt 10505210  T

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Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 11768397 - 11768494
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||||| ||||| | | ||||||||||| |||||    
T  11768397 tttaattaagtgtgcaacttttcctttttctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 10030921 - 10030989
Alignment:
Q  95 atatttttcggtaatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact 163  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10030921 atatttttcagcaatcatatacttatcaccaaatgattattacatttatctcttttgttgggtaatact 10030989  T

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Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 10076611 - 10076691
Alignment:
Q  374 tttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  10076611 tttgctttaataagatcaactgaagatggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagt 10076691  T

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Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 10125872 - 10125940
Alignment:
Q  95 atatttttcggtaatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact 163  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10125872 atatttttcagcaatcatatacttatcaccaaatgattattacatttatctcttttgttgggtaatact 10125940  T

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Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 10434768 - 10434688
Alignment:
Q  374 tttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||| |||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  10434768 tttgctttaacaatatcattagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagt 10434688  T

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Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 10657912 - 10658010
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagctttta 284  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||   ||||| || |||| | |||||||||||||||||||    
T  10657912 tttaattgagtgtgtaacttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagctttta 10658008  T

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Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 10579947 - 10580026
Alignment:
Q  374 tttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||| |||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  10579947 tttgctttaacaa-atcaacacaagatggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagt 10580026  T

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Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 10662627 - 10662721
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||   ||||| || |||| | |||||||||||||||||    
T  10662627 tttaattgagtgtgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 10259657 - 10259713
Alignment:
Q  107 aatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact 163  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  10259657 aatcatatacttatcagcaaatgattattacatttatctcttttgttgggtaatact 10259713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 11768569 - 11768645
Alignment:
Q  364 tactacctgatttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaact 440  Q
    ||||| |||||||| | | ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11768569 tactagctgatttggtctaacaagatcaactgaagatggcggcaactatgataggaggcgcttttctctcggcaact 11768645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 10259863 - 10259930
Alignment:
Q  205 tttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgct 272  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  10259863 tttcttttgctttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

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Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 10076299 - 10076370
Alignment:
Q  211 tttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| || |  | |||||| ||||||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagcttt 10076370  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 10516626 - 10516674
Alignment:
Q  199 caactttttctgtttctttgtatcaattattttgagggatgtgggtcca 247  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  10516626 caacttttcctttttctttgtatcaattattttgaaggatgtgggtcca 10516674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 13160345 - 13160405
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  13160345 agaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 13160405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 13170396 - 13170456
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  13170396 agaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 13170456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 13332269 - 13332329
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  13332269 agaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 13332329  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 13289030 - 13289090
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||| |||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  13289030 agaaaatggctgcaactttggtgggaggagcttttctctctgctactgttcagactttagt 13289090  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 13343454 - 13343514
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||| |||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  13343454 agaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 13343514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 10434996 - 10434963
Alignment:
Q  184 ttttaattgagtgtgcaactttttctgtttcttt 217  Q
    |||||||||||||||||||||||||| |||||||    
T  10434996 ttttaattgagtgtgcaactttttctttttcttt 10434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 10183369 - 10183401
Alignment:
Q  185 tttaattgagtgtgcaactttttctgtttcttt 217  Q
    ||||||||||||||||||||||||| |||||||    
T  10183369 tttaattgagtgtgcaactttttctttttcttt 10183401  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10219869 - 10219921
Alignment:
Q  1 ctgccaactaaccatccaaacacagtactgttgtcagtccattcacatgctaa 53  Q
    |||||||| ||||||||||| |||||||||||||  || |||||||| |||||    
T  10219869 ctgccaaccaaccatccaaaaacagtactgttgttggttcattcacaagctaa 10219921  T

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Target: scaffold0083 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 50790 - 50705
Alignment:
Q  197 tgcaactttttctgtttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 282  Q
    ||||| |||| || |||||||||||||||||||||| ||||||||||||||||||||| || || | |||||||||||||||||||    
T  50790 tgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagcttt 50705  T

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Target: scaffold0083; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 454
Target Start/End: Complemental strand, 50545 - 50449
Alignment:
Q  358 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  50545 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagt 50449  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 44958382 - 44958322
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  44958382 agaagatggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagt 44958322  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 26906249 - 26906322
Alignment:
Q  381 ttacaagatcaacagaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||| |||| |||||||||||||| ||||||||||||  |||||||||||||||| ||||||||| |||||    
T  26906249 ttacaagttcaatagaagatggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagt 26906322  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 136592 - 136532
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  136592 agaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 136532  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 146643 - 146583
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaactgttcagaccttagt 454  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||||||||| |||||    
T  146643 agaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagt 146583  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 19956982 - 19957027
Alignment:
Q  394 agaagatggctgcaactatgataggaggcgcttttctctctgcaac 439  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  19956982 agaagatggttgcaactatgataggaggagcttttctctcagcaac 19957027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26799340 - 26799392
Alignment:
Q  1 ctgccaactaaccatccaaacacagtactgttgtcagtccattcacatgctaa 53  Q
    |||||||| ||||||||||| |||||||||||||  || |||||||| |||||    
T  26799340 ctgccaaccaaccatccaaaaacagtactgttgttggttcattcacaagctaa 26799392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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