View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_29 (Length: 390)
Name: NF0063_2D_low_29
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_29
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 372
Target Start/End: Complemental strand, 5809705 - 5809339
Alignment:
Q
7
tatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacg
106
Q
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
5809705
tatggtgttagtaaaagtgatttactggatcgagaagctgatgatcttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaa-aacg
5809607
T
Q
107
catttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaa
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
5809606
catttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgtagaa
5809507
T
Q
207
cttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttg
304
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
5809506
cttgccttatggtgccaccgaaaatgaacttgcaaagattttggggaaatttggtagtttggataaaataattctcgcctcgacaaaaacattggccttg
5809407
T
Q
305
gtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttggtgaggtacatat
372
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5809406
gtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttggtgaggtacatat
5809339
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 37755137 - 37754793
Alignment:
Q
7
tatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacg
106
Q
||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | |||||| | |||| |||||||||| |||||||| || |
T
37755137
tatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatg
37755038
T
Q
107
catttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaa
206
Q
|||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||| || ||
T
37755037
catttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaa
37754938
T
Q
207
cttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttg
304
Q
||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
T
37754937
tttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaaaaacattggccctg
37754838
T
Q
305
gtatttttcctctctccttcttttcatgacatgtc-tatgtatttt
349
Q
|||||||||| |||||||| | ||||||| |||| ||||||||||
T
37754837
gtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt
37754793
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 37761111 - 37760767
Alignment:
Q
7
tatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacg
106
Q
||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | |||||| | |||| |||||||||| |||||||| || |
T
37761111
tatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatg
37761012
T
Q
107
catttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaa
206
Q
|||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||| || ||
T
37761011
catttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaa
37760912
T
Q
207
cttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttg
304
Q
||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
T
37760911
tttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaaaaacattggccctg
37760812
T
Q
305
gtatttttcctctctccttcttttcatgacatgtc-tatgtatttt
349
Q
|||||||||| |||||||| | ||||||| |||| ||||||||||
T
37760811
gtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt
37760767
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 38605567 - 38605875
Alignment:
Q
8
atggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgc
107
Q
||||||||||||||||||||||| || || |||||||||||| |||||| | | |||||||||||||||| | ||||||| ||||||||| || ||
T
38605567
atggtgttagtaaaagtgatttattgggtccagaagctgatgatgttgctgcaaatgttgctctgggagaaactgatgtgattttagaaacaaaaaatgc
38605666
T
Q
108
atttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaac
207
Q
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| ||||||| || ||
T
38605667
atttaaaaaggctggagtgaatgtggagtctttggaggagcttgcggagggtaaagtttatggcgttaaaagaagtaaccatgtacttttagcaaaaaat
38605766
T
Q
208
ttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttgg
305
Q
||||| |||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||
T
38605767
ttgccatatggtgctacggaaaatgaacttgcagagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaagaacattggccctgg
38605866
T
Q
306
tatttttcc
314
Q
|||||||||
T
38605867
tatttttcc
38605875
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 37739284 - 37738980
Alignment:
Q
8
atggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacg-tattgctctgggagaaacacaagtgatttcagaaacaaagaacg
106
Q
|||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||| |||| |||||| |||||| | | |||| ||||||||| || |
T
37739284
atggtgttagtaaaagtgattttctggatccagaagctgatggtcttgcttcacggtatt-ctctggcagaaactgacgggattaaagaaacaaaaaatg
37739186
T
Q
107
catttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaa
206
Q
|||||| ||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
T
37739185
catttagaaaagctggagtgaacgtggagtctctggaggagcatgcgaagggtaaagttgatggcaggaaaagaagtaaccatgtacttttagcgaaaaa
37739086
T
Q
207
cttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttg
304
Q
||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
T
37739085
tttgccatatggtgctacggaaaatgatcttgcaaagatgtttgggaaatttggtagtttggataaaataattctgccctcgacaaaaacattggccctg
37738986
T
Q
305
gtattt
310
Q
||||||
T
37738985
gtattt
37738980
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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