View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_31 (Length: 389)
Name: NF0063_2D_low_31
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_31
Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 17523458 - 17523309
Alignment:
Q
225
gaaggaaaatttaatacagcttaattaccattattataaaattaattgcnnnnnnnnnnnnggattagagcttaattaatcattaatcttcctttctgac
324
Q
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
T
17523458
gaaggaaaatttaatacagcttaattaccattattataaaattaattgctttttattttttggattagagcttaattaatcattaatcttcctttctgac
17523359
T
Q
325
attttttgccactttctgaaaatttctcacttttactatcaccacaacac
374
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||
T
17523358
attttttgccactttctgaaaatttctcacttttactatcaccgcaacac
17523309
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17523552 - 17523504
Alignment:
Q
133
accgacatatgccacttctacgtcctcacacctcacacaaaacaacacc
181
Q
|||||||||||||||||||||||||||||||||||||||| ||||||||
T
17523552
accgacatatgccacttctacgtcctcacacctcacacaagacaacacc
17523504
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17523685 - 17523635
Alignment:
Q
1
aatacaatgccaagacatattccaaagtttctgctgagttcttcagtcact
51
Q
||||||||||||||||||||||||||||||||||| ||||| || ||||||
T
17523685
aatacaatgccaagacatattccaaagtttctgctcagttcctcggtcact
17523635
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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