View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_33 (Length: 386)
Name: NF0063_2D_low_33
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_33
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 43188167 - 43187860
Alignment:
Q
7
aaaatccagcagttgagcaccgagatataagacaagtagctcagtaagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagac
106
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43188167
aaaatccagcagttgagcaccgagatataagacaagtagctcaataagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagac
43188068
T
Q
107
cttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaattgaaagatatcagtggaggtcacaatatgaattcaa
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
43188067
cttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaactgaaagatatcagtggaggtcacaatatgaattcaa
43187968
T
Q
207
ttaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaaccactcaaaccgcaattaaactactcaaa
306
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
T
43187967
ttaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaatcactcaaaccgcaattaaactaatcaaa
43187868
T
Q
307
tagcagaa
314
Q
|| |||||
T
43187867
taacagaa
43187860
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 43187248 - 43187195
Alignment:
Q
314
aaacacagatttacacagtcatgagaattcaaactcaatcaaaaacacacttgat
368
Q
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
T
43187248
aaacacagatt-acacagtcatgagaattcaaactcaatcaaaaacacacttgat
43187195
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 22710133 - 22710090
Alignment:
Q
190
tcacaatatgaattcaattaattgcagtgttttaaagactgaac
233
Q
||||||||||| ||||||||||||||||||||||||||||||||
T
22710133
tcacaatatgacttcaattaattgcagtgttttaaagactgaac
22710090
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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