View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_34 (Length: 386)
Name: NF0063_2D_low_34
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 43188167 - 43187860
Alignment:
| Q |
7 |
aaaatccagcagttgagcaccgagatataagacaagtagctcagtaagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagac |
106 |
Q |
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| T |
43188167 |
aaaatccagcagttgagcaccgagatataagacaagtagctcaataagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagac |
43188068 |
T |
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| Q |
107 |
cttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaattgaaagatatcagtggaggtcacaatatgaattcaa |
206 |
Q |
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| T |
43188067 |
cttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaactgaaagatatcagtggaggtcacaatatgaattcaa |
43187968 |
T |
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| Q |
207 |
ttaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaaccactcaaaccgcaattaaactactcaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
43187967 |
ttaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaatcactcaaaccgcaattaaactaatcaaa |
43187868 |
T |
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| Q |
307 |
tagcagaa |
314 |
Q |
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| T |
43187867 |
taacagaa |
43187860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 43187248 - 43187195
Alignment:
| Q |
314 |
aaacacagatttacacagtcatgagaattcaaactcaatcaaaaacacacttgat |
368 |
Q |
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| T |
43187248 |
aaacacagatt-acacagtcatgagaattcaaactcaatcaaaaacacacttgat |
43187195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 22710133 - 22710090
Alignment:
| Q |
190 |
tcacaatatgaattcaattaattgcagtgttttaaagactgaac |
233 |
Q |
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| T |
22710133 |
tcacaatatgacttcaattaattgcagtgttttaaagactgaac |
22710090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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