View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_35 (Length: 381)
Name: NF0063_2D_low_35
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_35
[» ] chr6 (2 HSPs)
Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 13855191 - 13855571
Alignment:
Q
1
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga
100
Q
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
13855191
gaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgcttgaga
13855290
T
Q
101
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13855291
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc
13855390
T
Q
201
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatg
300
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13855391
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatg
13855490
T
Q
301
aattactgacatgacacgataaggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatata
381
Q
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13855491
aattactgacatgacacgatagggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatata
13855571
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 13849401 - 13849706
Alignment:
Q
1
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga
100
Q
|||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||
T
13849401
gaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgttagaga
13849500
T
Q
101
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc
200
Q
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13849501
agccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc
13849600
T
Q
201
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgtttt-gttttgataatgttgatgtat
299
Q
||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
T
13849601
tagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgtttgtgttttggttttgataatgttgatgtat
13849700
T
Q
300
gaatta
305
Q
||||||
T
13849701
gaatta
13849706
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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