View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_35 (Length: 381)
Name: NF0063_2D_low_35
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_35 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 13855191 - 13855571
Alignment:
| Q |
1 |
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga |
100 |
Q |
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| T |
13855191 |
gaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgcttgaga |
13855290 |
T |
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| Q |
101 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
200 |
Q |
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| T |
13855291 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
13855390 |
T |
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| Q |
201 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatg |
300 |
Q |
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| T |
13855391 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatg |
13855490 |
T |
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| Q |
301 |
aattactgacatgacacgataaggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatata |
381 |
Q |
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| T |
13855491 |
aattactgacatgacacgatagggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatata |
13855571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 13849401 - 13849706
Alignment:
| Q |
1 |
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga |
100 |
Q |
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| T |
13849401 |
gaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgttagaga |
13849500 |
T |
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| Q |
101 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
200 |
Q |
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| T |
13849501 |
agccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
13849600 |
T |
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| Q |
201 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgtttt-gttttgataatgttgatgtat |
299 |
Q |
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| T |
13849601 |
tagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgtttgtgttttggttttgataatgttgatgtat |
13849700 |
T |
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| Q |
300 |
gaatta |
305 |
Q |
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| T |
13849701 |
gaatta |
13849706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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