View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_39 (Length: 348)
Name: NF0063_2D_low_39
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_39
[» ] chr3 (2 HSPs)
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 177 - 348
Target Start/End: Complemental strand, 52512900 - 52512729
Alignment:
Q
177
atgtggaactctctatcatgtagaattaacgagatgatcatttattgttgtaataattctataaatgttttctgtgtttgagaaatatactatacttaat
276
Q
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
T
52512900
atgtggaactctctatcctgtagaattaactagatgatcatttattgttgtaataattctataaattttttctgtgtttgtgaaatatactatacttata
52512801
T
Q
277
tatatatattttgactagactagggtttgatttgtctttgctcaagatgaagtgatatatatactacatggt
348
Q
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
T
52512800
tatatatattttgactaaactagggtttgatttgtctttgctcaagataaagtgatatatatactacatggt
52512729
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 52513090 - 52512934
Alignment:
Q
1
cctgtttcttctttatccagtaccacatcctatagagttgttggaggaaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagt
100
Q
|||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52513090
cctgtttcttctttatccagtaccccatcctatacagttggaggaaccaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagt
52512991
T
Q
101
tttaattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc
157
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52512990
tttaattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc
52512934
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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