View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_2D_low_39 (Length: 348)
Name: NF0063_2D_low_39
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_39 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 177 - 348
Target Start/End: Complemental strand, 52512900 - 52512729
Alignment:
| Q |
177 |
atgtggaactctctatcatgtagaattaacgagatgatcatttattgttgtaataattctataaatgttttctgtgtttgagaaatatactatacttaat |
276 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
52512900 |
atgtggaactctctatcctgtagaattaactagatgatcatttattgttgtaataattctataaattttttctgtgtttgtgaaatatactatacttata |
52512801 |
T |
|
| Q |
277 |
tatatatattttgactagactagggtttgatttgtctttgctcaagatgaagtgatatatatactacatggt |
348 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52512800 |
tatatatattttgactaaactagggtttgatttgtctttgctcaagataaagtgatatatatactacatggt |
52512729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 52513090 - 52512934
Alignment:
| Q |
1 |
cctgtttcttctttatccagtaccacatcctatagagttgttggaggaaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52513090 |
cctgtttcttctttatccagtaccccatcctatacagttggaggaaccaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagt |
52512991 |
T |
|
| Q |
101 |
tttaattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512990 |
tttaattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc |
52512934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University