View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_4 (Length: 857)

Name: NF0063_2D_low_4
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_4
NF0063_2D_low_4
[»] chr4 (24 HSPs)
chr4 (444-837)||(31150233-31150626)
chr4 (14-371)||(31150704-31151061)
chr4 (496-785)||(31161579-31161868)
chr4 (74-266)||(31162086-31162276)
chr4 (480-805)||(31019717-31020042)
chr4 (470-805)||(31159166-31159501)
chr4 (562-681)||(31476882-31477001)
chr4 (480-803)||(31029600-31029923)
chr4 (473-786)||(31489497-31489810)
chr4 (65-263)||(31489046-31489244)
chr4 (63-255)||(31020316-31020508)
chr4 (63-255)||(31030197-31030389)
chr4 (68-254)||(31496404-31496590)
chr4 (592-686)||(31496865-31496959)
chr4 (18-239)||(31159734-31159955)
chr4 (593-681)||(31502035-31502123)
chr4 (492-684)||(31528447-31528639)
chr4 (497-786)||(31033918-31034207)
chr4 (68-254)||(31501574-31501760)
chr4 (57-263)||(31528969-31529175)
chr4 (162-262)||(31476558-31476658)
chr4 (474-835)||(31482645-31483012)
chr4 (591-686)||(31245022-31245117)
chr4 (68-162)||(31482303-31482397)
[»] chr2 (2 HSPs)
chr2 (556-683)||(17438730-17438857)
chr2 (66-259)||(17438135-17438328)
[»] chr6 (22 HSPs)
chr6 (556-685)||(33642504-33642633)
chr6 (556-684)||(31560711-31560839)
chr6 (556-685)||(33059612-33059741)
chr6 (150-259)||(33642147-33642256)
chr6 (556-684)||(33273842-33273970)
chr6 (62-261)||(31566566-31566765)
chr6 (556-683)||(31567030-31567157)
chr6 (556-682)||(9168826-9168952)
chr6 (137-259)||(33306927-33307049)
chr6 (556-805)||(33402540-33402792)
chr6 (556-684)||(33306536-33306664)
chr6 (562-682)||(33390124-33390244)
chr6 (593-684)||(33264699-33264790)
chr6 (593-684)||(33412003-33412094)
chr6 (153-239)||(13608607-13608693)
chr6 (556-685)||(33360128-33360257)
chr6 (68-255)||(33390518-33390705)
chr6 (68-259)||(33403052-33403243)
chr6 (87-259)||(33288016-33288188)
chr6 (66-173)||(33060082-33060189)
chr6 (265-302)||(12781883-12781920)
chr6 (66-115)||(33361083-33361132)
[»] scaffold1749 (1 HSPs)
scaffold1749 (606-684)||(49-127)
[»] scaffold0428 (1 HSPs)
scaffold0428 (606-684)||(8810-8888)
[»] chr8 (1 HSPs)
chr8 (186-239)||(6472955-6473008)


Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 444 - 837
Target Start/End: Complemental strand, 31150626 - 31150233
Alignment:
Q  444 tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150626 tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt 31150527  T
Q  544 tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtagg 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150526 tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtagg 31150427  T
Q  644 aatttgtgggatgggtggagtagggaagacaacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatcta 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150426 aatttgtgggatgggtggagtagggaagacaacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatcta 31150327  T
Q  744 agcaaaatttatagggatgatggtctaattggtgctcaaaagctaattctgcatcaaactctagttgaagaacaacttcagacatgcaatattt 837  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150326 agcaaaatttatagggatgatggtctaattggtgctcaaaagctaattctgcatcaaactctagttgaagaacaacttcagacatgcaatattt 31150233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 31151061 - 31150704
Alignment:
Q  14 agtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151061 agtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtg 31150962  T
Q  114 cgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150961 cgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacac 31150862  T
Q  214 aagtggccaatctctctggatgggatgtacgttataagtaagtaatcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150861 aagtggccaatctctctggatgggatgtacgttataagtaagtaatcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacat 31150762  T
Q  314 aaatttagtaattgatcacgacgtcctcgagaaactatattaattaatcaaaagagag 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150761 aaatttagtaattgatcacgacgtcctcgagaaactatattaattaatcaaaagagag 31150704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 496 - 785
Target Start/End: Complemental strand, 31161868 - 31161579
Alignment:
Q  496 agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt 595  Q
    |||||||||||||||| ||||| ||| | |||||  |||||||||||| | | | |||||||||  ||||||  |||||| |||||| |  | | |||||    
T  31161868 agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt 31161769  T
Q  596 agaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctactattctatac 695  Q
    ||||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||| ||||||||| | |  | ||||||    |||||    
T  31161768 agaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatac 31161669  T
Q  696 aacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtctaattggtgctcaaaag 785  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||  ||  |||||||||||    
T  31161668 aacaaaatctttcatcaatttcctgtgctcttccttattgatgatctaagaaaaatttataggcatgatggtccgatcagtgctcaaaag 31161579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 31162276 - 31162086
Alignment:
Q  74 tgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaa 173  Q
    |||||||||||| ||||||||||||||||| |  ||| || ||||||||||||||  ||||| |||||||||    ||||||||| ||||||||||||||    
T  31162276 tgttctgcctgttttctatgatgttgatccttatgagatgagatatcaaaaaggaaattatgttgaagcctttttcaaacatgaacaaagattccaacaa 31162177  T
Q  174 aactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttcctt 266  Q
     ||| ||| || |||||||||||||||||||| |  |||||||| |||||  ||||||| |||||||| ||| ||||||||||||||||||||    
T  31162176 gactctgagatggtgcaaagatggagggaagctcaaacacaagtcgccaa--tctctggttgggatgtgcgtcataagtaagtaatcttcctt 31162086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 480 - 805
Target Start/End: Complemental strand, 31020042 - 31019717
Alignment:
Q  480 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 579  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31020042 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31019943  T
Q  580 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaaccct 679  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||    
T  31019942 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactct 31019843  T
Q  680 tgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtctaattggtgct 779  Q
     ||||||  | ||||     |||||||||||||||||  ||     ||  |||||||||||||||||||||| |||||  ||||||||| | |||||||     
T  31019842 ggctactgctttatatggtcaaatctctcatcaatttgatgcacgttgttttattgatgatctaagcaaaatatatagacatgatggtcaagttggtgca 31019743  T
Q  780 caaaagctaattctgcatcaaactct 805  Q
    ||||||| |||||| || ||||||||    
T  31019742 caaaagcaaattctacaccaaactct 31019717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 470 - 805
Target Start/End: Complemental strand, 31159501 - 31159166
Alignment:
Q  470 taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtc 569  Q
    |||||||| |||||| ||| ||||||||||||||||||| |||||||||||    ||||| | |||| |||| |||||   |||||||||| | |||||     
T  31159501 taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacgaatatatcgggtcacaaattttcatgtcttccaaaagaattagtt 31159402  T
Q  570 gggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtaggga 669  Q
    || ||  ||| |||| || |  || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| ||||||    
T  31159401 ggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaataggga 31159302  T
Q  670 agacaacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtct 769  Q
    ||||||| ||| |||||  | |||     | ||||||||||| ||||  |||    ||  |||||||||||||||||| ||| |||||  |||||||||     
T  31159301 agacaactcttactactgctttatgtggtagaatctctcatcgatttgatgtacgttgttttattgatgatctaagcagaatatatagacatgatggtcc 31159202  T
Q  770 aattggtgctcaaaagctaattctgcatcaaactct 805  Q
    ||||||||| ||||||| ||| || || ||||||||    
T  31159201 aattggtgcacaaaagcaaatcctacaccaaactct 31159166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 562 - 681
Target Start/End: Original strand, 31476882 - 31477001
Alignment:
Q  562 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 661  Q
    ||||||| |||||| ||||||||  ||| ||||||||||| | |||||||||||||||  |||||||||| | |||||||||||||||||||||||||||    
T  31476882 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtgg 31476981  T
Q  662 agtagggaagacaacccttg 681  Q
    | ||||||||||||||||||    
T  31476982 aatagggaagacaacccttg 31477001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 480 - 803
Target Start/End: Complemental strand, 31029923 - 31029600
Alignment:
Q  480 aggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcatt 579  Q
    ||||| ||| |||| |||||| ||||||| |||||||||||  | ||||| |||||| |||| |||||   |||||||||| |  |||| || ||| ||     
T  31029923 aggcctcaatatgctgagattaaaaagattgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatc 31029824  T
Q  580 ctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaaccct 679  Q
    ||| | || |  || ||| ||| |  ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||    
T  31029823 ctcatatagaaaaagtagtaaatctattacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactct 31029724  T
Q  680 tgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtctaattggtgct 779  Q
      |||||  | ||||     |||||||||||||||||  ||     ||  |||||||||||||||||||||| |||||  ||||||||| | |||||||     
T  31029723 gactactgctttatatggtcaaatctctcatcaatttgatgcacgttgttttattgatgatctaagcaaaatatatagacatgatggtcaagttggtgca 31029624  T
Q  780 caaaagctaattctgcatcaaact 803  Q
    ||||||| |||||| || ||||||    
T  31029623 caaaagcaaattctacaccaaact 31029600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 473 - 786
Target Start/End: Original strand, 31489497 - 31489810
Alignment:
Q  473 aacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggg 572  Q
    ||||| |||||| ||| ||| ||||||| ||||||| ||||| |||||  | ||||| |||||| |||| | |||   |||||||||| |  |||| ||     
T  31489497 aactttcaggcctcaatatgaagagattaaaaagattgttgacgagatattgaatatattgggtcacaattattcatctcttccaaaagaactagttggt 31489596  T
Q  573 atgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaaga 672  Q
    ||| |||||| | || || || ||| ||| |  ||||||||||||||  |||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  31489597 atgaattctcatatagataaagtagcaaatctattacttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaaga 31489696  T
Q  673 caacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtctaat 772  Q
    |||| || ||||||  | ||||     |||||||||||||||||  ||     ||  |||||||||||||||||||||| |||||  ||||||||| | |    
T  31489697 caactctggctactgctttatatggtcaaatctctcatcaatttgatgcacgttgttttattgatgatctaagcaaaatatatagacatgatggtcaagt 31489796  T
Q  773 tggtgctcaaaagc 786  Q
    |||||| |||||||    
T  31489797 tggtgcacaaaagc 31489810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 31489046 - 31489244
Alignment:
Q  65 tggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaaga 164  Q
    ||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| ||| |    
T  31489046 tggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaaca 31489145  T
Q  165 ttccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttc 263  Q
    ||||||||  ||| | |  | || ||||||||||||||||| |||||||||||||  ||| |||| || |||||| | ||| ||||||||| |||||||    
T  31489146 ttccaacatgactctcatgtggtacaaagatggagggaagctctgacacaagtggggaatatctcaggctgggatcttcgtgataagtaagcaatcttc 31489244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 31020508 - 31020316
Alignment:
Q  63 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 162  Q
    ||||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| |||    
T  31020508 tctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaa 31020409  T
Q  163 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaag 255  Q
     |||||||||  ||| | |  | || ||||| ||||||||||| |||||||||||||  ||| ||||||| |||||| | ||| |||||||||    
T  31020408 cattccaacatgactctcatgtggtacaaagttggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 31030389 - 31030197
Alignment:
Q  63 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 162  Q
    ||||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||||||||  ||| | |||||||||  | ||||||||| |||    
T  31030389 tctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaa 31030290  T
Q  163 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaag 255  Q
     |||||||||  | | | |  | || ||||| ||||||||||| |||||||||||||  ||| ||||||| |||||| | ||| |||||||||    
T  31030289 cattccaacatgaatctcatgtggtacaaagttggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 31496404 - 31496590
Alignment:
Q  68 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 167  Q
    ||||| |||||||||||| |||||||||||||| || ||   ||||||| | ||||  |||  ||||| |||||| || |  ||||||||| ||||||||    
T  31496404 aaaacatgttctgcctgttttctatgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattc 31496503  T
Q  168 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaa 254  Q
    |||||| ||| | | || |||||||||||||||||||| || | |||||| ||  |||||||||| |||||| ||| | ||||||||    
T  31496504 caacaagactctcagatggtgcaaagatggagggaagctctaatacaagtcgctgatctctctggttgggatctacatgataagtaa 31496590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 592 - 686
Target Start/End: Original strand, 31496865 - 31496959
Alignment:
Q  592 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 686  Q
    |||||||||| | |||||||||||||||| || ||||||  |||||  ||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  31496865 aattagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctact 31496959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 31159955 - 31159734
Alignment:
Q  18 tggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgat 117  Q
    ||||| |||||||| ||||| | ||| |||||  ||  |||| | |||||||  |||||||| ||| | ||||||||||||||||| || |||||| ||     
T  31159955 tggtgcttgcgagagttggaatacatccttcactgcagtcaagtttctggaactcgtgttctccctattttctatgatgttgatccttctgaggtgagac 31159856  T
Q  118 atcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagt 217  Q
    ||||||| ||| ||||||  |||||| | || ||||| |||||||||||||||||  | |  || || || ||||||||||||| |   || ||||||||    
T  31159855 atcaaaatggaagttatggagaagcccttgccaaacacgaagaaagattccaacatgaatcagagatggtacaaagatggagggcaagtctaacacaagt 31159756  T
Q  218 ggccaatctctctggatgggat 239  Q
     |||||||||||||| ||||||    
T  31159755 cgccaatctctctggttgggat 31159734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 593 - 681
Target Start/End: Original strand, 31502035 - 31502123
Alignment:
Q  593 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttg 681  Q
    ||||||||||| |||||| ||||||||  |||||||||| |  | ||||||||| ||||||||||||||| ||||||||||||||||||    
T  31502035 attagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttg 31502123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 684
Target Start/End: Complemental strand, 31528639 - 31528447
Alignment:
Q  492 gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatg 591  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||  || ||| ||||| |  ||||||||  ||||||| |||| ||||||||   || |      
T  31528639 gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctctcatagaaa 31528540  T
Q  592 aattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 684  Q
     ||| ||||| | ||||||||||||   | ||||||||||  |  |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  31528539 gattggaaaagcttttacttttggatgtggttgatgatgttaggattgttggaatttctgggatgggtggagtagggaagacaactcttgcta 31528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 786
Target Start/End: Complemental strand, 31034207 - 31033918
Alignment:
Q  497 gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta 596  Q
    |||||||||||| |||||||||||  ||||||  |||||||||  |||||| | |||||||||| ||||||| |||||  |||||| | || | ||||||    
T  31034207 gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta 31034108  T
Q  597 gaaaaa-catttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctactattctatac 695  Q
    ||||||   |||||||||||| ||   ||||  | | |  ||||||||||||| ||| ||||| ||| |||| ||||| || || ||||||  ||| ||     
T  31034107 gaaaaagtgtttacttttggaatcaactgatattatacaggttgtaggaatttatggaatgggaggaataggaaagacgactctagctactgctctttat 31034008  T
Q  696 aacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggtctaattggtgctcaaaagc 786  Q
     ||| ||||||||||||||||  ||  | |||| | || |||||| |||||||| |||||||  |||| ||||  ||||||||||||||||    
T  31034007 gacagaatctctcatcaatttgatgcatgctgcttcatcgatgatataagcaaagtttatagaaatgaaggtc-gattggtgctcaaaagc 31033918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 31501574 - 31501760
Alignment:
Q  68 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 167  Q
    ||||| |||||||||||| |||||||||||||||||  | | ||||||| | ||||  ||   ||||  |||||| || |  ||||||||| ||| ||||    
T  31501574 aaaacatgttctgcctgttttctatgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattc 31501673  T
Q  168 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaa 254  Q
    |||||| ||| | | || |||| ||||||||||||||| ||||||||||| |||  ||| ||||| || ||| ||||| ||||||||    
T  31501674 caacaagactctcagatggtgctaagatggagggaagctctgacacaagtcgccggtctatctggttgcgatctacgtgataagtaa 31501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 263
Target Start/End: Complemental strand, 31529175 - 31528969
Alignment:
Q  57 caactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatg 156  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||||| | ||||  ||  |||||    |||| || ||  ||||||    
T  31529175 caactttctggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcgaaagcaaagtgggagttataaaaaagcatttgcccaacatg 31529076  T
Q  157 aagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagt 256  Q
    | ||||||||| ||||| ||  |||  |  ||||| ||||||||  ||| || || ||||| |||||||| || || |||||| ||||| ||||||||||    
T  31529075 aggaaagattcaaacaagacactgaggtcctgcaaggatggaggacagctctcacgcaagtcgccaatctttcaggttgggatatacgtgataagtaagt 31528976  T
Q  257 aatcttc 263  Q
    | |||||    
T  31528975 attcttc 31528969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 31476558 - 31476658
Alignment:
Q  162 agattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatct 261  Q
    |||||| ||||| ||| | |||| |||| | ||||||||| ||| ||||||||||| ||| |||||||||| |||||| ||||| |||||||| ||||||    
T  31476558 agattcaaacaagactctcaaatggtgctacgatggagggcagctctgacacaagtcgccgatctctctggttgggatctacgtgataagtaaataatct 31476657  T
Q  262 t 262  Q
    |    
T  31476658 t 31476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 835
Target Start/End: Original strand, 31482645 - 31483012
Alignment:
Q  474 acttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcggga 573  Q
    |||| ||||||| || ||| |||||||||||  || ||| ||||||| ||  | | ||| |||||||| |||||  ||||||||||  ||||||| || |    
T  31482645 actttcaggccagaaaatgaagagattgaaactattgttaaagagatagtggagacgtttggttacaaattttcatatcttccaaatgatttagttggaa 31482744  T
Q  574 tgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagac 673  Q
    ||| | ||||| || | ||||| |||||    ||||||||||||||  ||||| | ||||  |  || ||||||||||||||| ||||||| ||||||||    
T  31482745 tgcttcctcctatagaagaattggaaaagtgcttacttttggactccgttgataaggtcctggccgttggaatttgtgggatgagtggagttgggaagac 31482844  T
Q  674 aacccttgctactattctat------acaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttatagggatgatggt 767  Q
    ||| |||||| || || |||      |||| |||| ||| | ||||||   ||  | |||  ||||||||||| |||||||||  | |||  || | |||    
T  31482845 aactcttgcttctgttttatattgcaacaagaaaaactcacctcaattcgatgcatgctgttttattgatgatgtaagcaaaaaatttagatattacggt 31482944  T
Q  768 ctaattggtgctcaaaagctaattctgcatcaaactctagttgaagaacaacttcagacatgcaatat 835  Q
    | | ||||||| ||||||| |||||| ||||||||||||| |||||||||  |||||| || ||||||    
T  31482945 ccagttggtgcacaaaagcaaattctacatcaaactctaggtgaagaacacattcagatatacaatat 31483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 686
Target Start/End: Original strand, 31245022 - 31245117
Alignment:
Q  591 gaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctact 686  Q
    ||||||||||| | |||  || |||||||   ||||||||| || || ||||| |||||||| ||||||||| |||||||||| || |||||||||    
T  31245022 gaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtggaatagggaagactactcttgctact 31245117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 31482303 - 31482397
Alignment:
Q  68 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 162  Q
    ||||||||||| | |||| |||||||||||  ||||||| ||||| ||| | ||||  ||  |||||||| ||||||| || |||||||||||||    
T  31482303 aaaacgtgttcggactgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaagaaa 31482397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 683
Target Start/End: Original strand, 17438730 - 17438857
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| |||||| ||| |||| | |||||||||| |||||    
T  17438730 caaaagatttagttgggataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggat 17438829  T
Q  656 gggtggagtagggaagacaacccttgct 683  Q
    ||| ||| ||||||||||||||||||||    
T  17438830 gggaggaatagggaagacaacccttgct 17438857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 259
Target Start/End: Original strand, 17438135 - 17438328
Alignment:
Q  66 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagat 165  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||| | ||||  ||   ||||  |||||| || |  ||||||||| ||||||    
T  17438135 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagat 17438234  T
Q  166 tccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaat 259  Q
    |||||||| || || | |  |||  ||||||||||||||| || |  |||||||  | | || |||| |||||| ||||| |||||||||||||    
T  17438235 tccaacaagaccttcagaaggtgtcaagatggagggaagctctaaagcaagtggggagtatcgctggttgggatctacgtgataagtaagtaat 17438328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 556 - 685
Target Start/End: Original strand, 33642504 - 33642633
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  33642504 caaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaat 33642603  T
Q  656 gggtggagtagggaagacaacccttgctac 685  Q
    ||| ||| ||||||||||||||||||||||    
T  33642604 gggaggaatagggaagacaacccttgctac 33642633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 684
Target Start/End: Original strand, 31560711 - 31560839
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| ||||||||||||  ||||| ||| |||||| ||||||||||||| ||    
T  31560711 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaat 31560810  T
Q  656 gggtggagtagggaagacaacccttgcta 684  Q
    ||| ||| ||||||||||| |||||||||    
T  31560811 gggaggaatagggaagacagcccttgcta 31560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 556 - 685
Target Start/End: Complemental strand, 33059741 - 33059612
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| |||| | |||| |||| ||||| |||||| ||||  |||||| ||| |||| | ||||||||||||| ||    
T  33059741 caaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatggtgttcgtgctataggaatttgtggaat 33059642  T
Q  656 gggtggagtagggaagacaacccttgctac 685  Q
    ||| ||| ||||||| ||||||||||||||    
T  33059641 gggaggaatagggaaaacaacccttgctac 33059612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 33642147 - 33642256
Alignment:
Q  150 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 249  Q
    ||||||||| |||||||||||||| ||||| |||| |||  ||||||||||||||| || | ||||||||  | | ||||||| |||||| ||||| |||    
T  33642147 aaacatgaacaaagattccaacaagactttcaaatggtgtcaagatggagggaagctctaaaacaagtggggagtatctctggttgggatctacgtgata 33642246  T
Q  250 agtaagtaat 259  Q
    ||||||||||    
T  33642247 agtaagtaat 33642256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 33273970 - 33273842
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||| | || | | |||| |||| |||||||||||||||||| ||||   ||| |||| | ||||||||||||| ||    
T  33273970 caaaagatttagttgggatagattctcgtttagacggattacaaaatcatttacttttggactcggttgacagtgttcgtgctataggaatttgtggaat 33273871  T
Q  656 gggtggagtagggaagacaacccttgcta 684  Q
    ||| ||| |||||||||||||||||||||    
T  33273870 gggaggaatagggaagacaacccttgcta 33273842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 261
Target Start/End: Original strand, 31566566 - 31566765
Alignment:
Q  62 atctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaa 161  Q
    ||||| ||||| |||||| | ||| ||||||||||||||||| || ||||| ||| | ||||  ||   |||| ||||||| || || ||||||||| ||    
T  31566566 atctgaaaaacatgttcttcttgttttctatgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaa 31566665  T
Q  162 agattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatct 261  Q
    ||||||| |||| ||| | | || |||  ||||||||| ||||| || | ||||||||| | | ||| ||| |||||| ||||| |||||||||||||||    
T  31566666 agattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggcgagtatctttggttgggatctacgtgataagtaagtaatct 31566765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 683
Target Start/End: Original strand, 31567030 - 31567157
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | |  ||| |||| ||||| |||||||||||| |||||| ||| |||| | ||||||||||||| ||    
T  31567030 caaaagatttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaat 31567129  T
Q  656 gggtggagtagggaagacaacccttgct 683  Q
    ||| ||| ||||||||||| ||||||||    
T  31567130 ggggggaatagggaagacagcccttgct 31567157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 682
Target Start/End: Complemental strand, 9168952 - 9168826
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| |||| | ||||||||||||| ||    
T  9168952 caaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaat 9168853  T
Q  656 gggtggagtagggaagacaacccttgc 682  Q
    ||| ||| ||||||||||||| |||||    
T  9168852 gggaggaatagggaagacaactcttgc 9168826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 33307049 - 33306927
Alignment:
Q  137 tgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgg 236  Q
    ||||||||| |  ||||||||| |||||||||||||| ||||||| || |||  ||||||||||||||| || | ||| ||||  | | ||||||| |||    
T  33307049 tgaagcctttgtcaaacatgaacaaagattccaacaagactttgagatggtgtcaagatggagggaagctctaaaacatgtggggagtatctctggttgg 33306950  T
Q  237 gatgtacgttataagtaagtaat 259  Q
    ||| ||||| |||||||||||||    
T  33306949 gatctacgtgataagtaagtaat 33306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 805
Target Start/End: Complemental strand, 33402792 - 33402540
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| |||||  ||||||||| | |||||| ||| |||| | || |||||||||| ||    
T  33402792 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatggtgttcgtgctataagaatttgtggaat 33402693  T
Q  656 gggtggagtagggaagacaacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgccttattgatgatctaagcaaaatttat 755  Q
    ||| ||| |||||||||||||||||||||  | | ||||   | |||||||||||| ||||  ||  | |||  | ||||||||| ||||||||||||||    
T  33402692 gggaggaatagggaagacaacccttgctatgaatttatatggccaaatctctcatcgatttagtgcatcctgtttcattgatgatgtaagcaaaatttat 33402593  T
Q  756 ag---ggatgatggtctaattggtgctcaaaagctaattctgcatcaaactct 805  Q
    ||     ||||||| | ||||| ||| ||||||| ||| || |||||||||||    
T  33402592 agattatatgatggcccaattgatgcacaaaagcaaatcctacatcaaactct 33402540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 33306664 - 33306536
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||| |||||  |||  ||| | ||||||||| ||| ||    
T  33306664 caaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaat 33306565  T
Q  656 gggtggagtagggaagacaacccttgcta 684  Q
    ||| ||| |||||||||||||||||||||    
T  33306564 gggaggaatagggaagacaacccttgcta 33306536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 562 - 682
Target Start/End: Complemental strand, 33390244 - 33390124
Alignment:
Q  562 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg 661  Q
    ||||||| |||||  |||||||| || | | |||| |||| ||||| |||||||||||  |||||| ||| | || | ||||||||||||| ||||| ||    
T  33390244 atttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggagg 33390145  T
Q  662 agtagggaagacaacccttgc 682  Q
    | |||||||||||||||||||    
T  33390144 aatagggaagacaacccttgc 33390124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 684
Target Start/End: Complemental strand, 33264790 - 33264699
Alignment:
Q  593 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 684  Q
    |||| |||| ||||| |||||||||  | |||||| ||| |||| | |||||||||| |||||||| ||| |||||||||||||||||||||    
T  33264790 attacaaaatcatttccttttggacatggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgcta 33264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 684
Target Start/End: Complemental strand, 33412094 - 33412003
Alignment:
Q  593 attagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 684  Q
    |||| |||| |||||||||||||||||| |||||| |||  ||| | | ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  33412094 attacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgcta 33412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 13608607 - 13608693
Alignment:
Q  153 catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 239  Q
    ||||||||||||||| || ||||||| ||    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  13608607 catgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 13608693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 685
Target Start/End: Complemental strand, 33360257 - 33360128
Alignment:
Q  556 caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat 655  Q
    ||||| ||||||| | |||  |||||||| |||| | |||| |||| ||||| |||||| ||||| |||||| ||| |||| | ||||||||||||| ||    
T  33360257 caaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaactcggttgatggtgttcgtgctataggaatttgtggaat 33360158  T
Q  656 gggtggagtagggaagacaacccttgctac 685  Q
     || ||| | ||||| ||||||||||||||    
T  33360157 tggaggaattgggaaaacaacccttgctac 33360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 33390705 - 33390518
Alignment:
Q  68 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 167  Q
    ||||| |||||| ||||| || |||||||||||||| || ||||| ||| | ||||  |||  ||||| | |||| || |  ||||||||| ||||||||    
T  33390705 aaaacttgttcttcctgttttttatgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattc 33390606  T
Q  168 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaag 255  Q
    |||||||||| | | || |||  ||||||||| ||||| || | ||||||||  | | ||||||| |||||| || || |||||||||    
T  33390605 caacaaaactctcagatggtgtcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctatgtgataagtaag 33390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 259
Target Start/End: Complemental strand, 33403243 - 33403052
Alignment:
Q  68 aaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattc 167  Q
    ||||| |||| | ||||| ||||||||||||||||| || ||||| ||| | ||||  ||   ||||  ||||||||| |  || |||||| ||||||||    
T  33403243 aaaacatgttattcctgttttctatgatgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaagcctttgtcaagcatgaaaaaagattc 33403144  T
Q  168 caacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaat 259  Q
    ||||||  |||||| || |||  ||||||||||||||| || | ||||||||  | | | ||||| |||||| || || |||||||||||||    
T  33403143 caacaaggctttgagatggtgtcaagatggagggaagctctaaaacaagtggggagtatatctggttgggatctatgtgataagtaagtaat 33403052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 33288188 - 33288016
Alignment:
Q  87 ttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattg 186  Q
    ||||||||||||||||| || ||||||||| | ||||  ||   ||||| |||||||||  | | ||||||| ||| |||||||||| ||| | | || |    
T  33288188 ttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatgg 33288089  T
Q  187 tgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaat 259  Q
    ||  ||||||||||||||| || | ||||||||  | | || |||| |||||| || || |||||||||||||    
T  33288088 tgtcaagatggagggaagccctaaaacaagtggggagtatcgctggttgggatctatgtgataagtaagtaat 33288016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 33060189 - 33060082
Alignment:
Q  66 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagat 165  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||  | ||||  |||  ||||  |||||| || |  ||||||||| ||||||    
T  33060189 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagat 33060090  T
Q  166 tccaacaa 173  Q
    ||||||||    
T  33060089 tccaacaa 33060082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 12781920 - 12781883
Alignment:
Q  265 ttattgatgcacttacatgtgcaaattttaaagctttg 302  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  12781920 ttattgatgcaattacttgtgcaaattttaaagctttg 12781883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 33361132 - 33361083
Alignment:
Q  66 ggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcg 115  Q
    ||||||| |||||| ||||| ||||||||||||||||| || ||||||||    
T  33361132 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcg 33361083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 127 - 49
Alignment:
Q  606 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 684  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  127 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 8888 - 8810
Alignment:
Q  606 ttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgcta 684  Q
    ||||||||| | ||| |||||| ||| |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  8888 ttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgcta 8810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 6473008 - 6472955
Alignment:
Q  186 gtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 239  Q
    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  6473008 gtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 6472955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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