View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_40 (Length: 338)

Name: NF0063_2D_low_40
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_40
NF0063_2D_low_40
[»] chr2 (23 HSPs)
chr2 (17-201)||(14769517-14769701)
chr2 (201-319)||(14770041-14770160)
chr2 (17-201)||(24584485-24584671)
chr2 (30-201)||(16291943-16292116)
chr2 (17-201)||(2609745-2609931)
chr2 (201-252)||(2610274-2610325)
chr2 (71-201)||(38453497-38453628)
chr2 (17-201)||(45368504-45368691)
chr2 (17-201)||(452495-452681)
chr2 (205-249)||(45368112-45368156)
chr2 (17-206)||(8180010-8180203)
chr2 (202-255)||(17581215-17581268)
chr2 (205-249)||(452110-452154)
chr2 (205-249)||(4807342-4807386)
chr2 (205-249)||(11992594-11992638)
chr2 (201-249)||(38453108-38453156)
chr2 (205-249)||(41197716-41197760)
chr2 (82-145)||(37281388-37281451)
chr2 (205-255)||(3865822-3865872)
chr2 (205-236)||(8180530-8180561)
chr2 (17-64)||(39287849-39287896)
chr2 (205-249)||(3244139-3244183)
chr2 (201-233)||(24584110-24584142)
[»] chr4 (24 HSPs)
chr4 (17-201)||(23907181-23907367)
chr4 (17-201)||(53703827-53704013)
chr4 (17-201)||(435449-435635)
chr4 (45-198)||(55769265-55769419)
chr4 (45-198)||(55833521-55833675)
chr4 (31-201)||(1777894-1778067)
chr4 (201-249)||(33226955-33227003)
chr4 (17-145)||(48623463-48623592)
chr4 (205-249)||(1777503-1777547)
chr4 (205-249)||(23906789-23906833)
chr4 (201-249)||(46583312-46583360)
chr4 (201-236)||(31960315-31960350)
chr4 (76-121)||(41005617-41005662)
chr4 (205-249)||(435979-436023)
chr4 (205-249)||(27450661-27450705)
chr4 (205-249)||(43433668-43433712)
chr4 (205-249)||(48174581-48174625)
chr4 (205-249)||(48623015-48623059)
chr4 (205-249)||(53707544-53707588)
chr4 (205-249)||(56375040-56375084)
chr4 (17-125)||(44860328-44860435)
chr4 (205-238)||(50286721-50286754)
chr4 (205-237)||(35690055-35690087)
chr4 (88-136)||(41427140-41427188)
[»] chr7 (24 HSPs)
chr7 (17-201)||(33350685-33350871)
chr7 (17-201)||(32629825-32630011)
chr7 (17-201)||(36870203-36870389)
chr7 (17-201)||(39907258-39907444)
chr7 (17-201)||(46356730-46356916)
chr7 (17-201)||(11593170-11593356)
chr7 (17-201)||(36651211-36651397)
chr7 (81-201)||(49028563-49028684)
chr7 (17-201)||(38606256-38606441)
chr7 (205-249)||(11593710-11593754)
chr7 (205-249)||(36651744-36651788)
chr7 (205-249)||(38606755-38606799)
chr7 (205-249)||(31004973-31005017)
chr7 (205-249)||(33350294-33350338)
chr7 (201-249)||(34869166-34869214)
chr7 (205-249)||(36869777-36869821)
chr7 (205-249)||(37616666-37616710)
chr7 (205-249)||(43281426-43281470)
chr7 (205-249)||(46356339-46356383)
chr7 (205-249)||(48919138-48919182)
chr7 (201-255)||(418891-418945)
chr7 (205-235)||(35906703-35906733)
chr7 (17-66)||(22346729-22346778)
chr7 (201-253)||(21517809-21517861)
[»] chr1 (23 HSPs)
chr1 (17-201)||(43241260-43241446)
chr1 (31-200)||(49348274-49348445)
chr1 (17-156)||(8671135-8671278)
chr1 (17-201)||(51441643-51441829)
chr1 (201-249)||(43240869-43240917)
chr1 (71-201)||(37463741-37463872)
chr1 (205-249)||(22089844-22089888)
chr1 (31-146)||(34828020-34828136)
chr1 (17-146)||(45833777-45833907)
chr1 (205-249)||(49347881-49347925)
chr1 (201-249)||(51441252-51441300)
chr1 (205-252)||(32083230-32083277)
chr1 (17-145)||(32405400-32405528)
chr1 (205-249)||(1210495-1210539)
chr1 (36-143)||(7813732-7813840)
chr1 (205-249)||(8671670-8671714)
chr1 (205-249)||(9592484-9592528)
chr1 (205-249)||(30202618-30202662)
chr1 (82-201)||(35829272-35829392)
chr1 (205-249)||(51601808-51601852)
chr1 (210-249)||(8391525-8391564)
chr1 (205-255)||(19936272-19936322)
chr1 (201-255)||(51234360-51234414)
[»] scaffold0018 (2 HSPs)
scaffold0018 (20-203)||(30688-30873)
scaffold0018 (205-249)||(31218-31262)
[»] chr5 (22 HSPs)
chr5 (32-201)||(24177756-24177927)
chr5 (18-201)||(20318209-20318394)
chr5 (81-201)||(1288468-1288589)
chr5 (94-201)||(1274560-1274668)
chr5 (46-157)||(3301095-3301207)
chr5 (201-249)||(20318737-20318785)
chr5 (17-201)||(2076353-2076539)
chr5 (112-201)||(12493241-12493331)
chr5 (205-249)||(1275015-1275059)
chr5 (205-249)||(10639047-10639091)
chr5 (205-249)||(12492875-12492919)
chr5 (201-255)||(36200528-36200582)
chr5 (205-249)||(3394460-3394504)
chr5 (17-65)||(17212485-17212533)
chr5 (201-249)||(24178270-24178318)
chr5 (205-249)||(28977345-28977389)
chr5 (94-148)||(7605754-7605809)
chr5 (201-255)||(3096922-3096976)
chr5 (201-255)||(20077299-20077353)
chr5 (205-249)||(2075962-2076006)
chr5 (205-249)||(3301599-3301643)
chr5 (205-249)||(34272772-34272816)
[»] scaffold0113 (1 HSPs)
scaffold0113 (17-201)||(13135-13323)
[»] chr8 (14 HSPs)
chr8 (17-201)||(36566120-36566306)
chr8 (17-146)||(15216207-15216336)
chr8 (94-201)||(36544447-36544555)
chr8 (201-249)||(4032982-4033030)
chr8 (205-249)||(36565729-36565773)
chr8 (216-255)||(10824570-10824609)
chr8 (205-255)||(37077515-37077565)
chr8 (206-255)||(43732355-43732404)
chr8 (205-249)||(39946607-39946651)
chr8 (205-249)||(42854492-42854536)
chr8 (205-255)||(30113678-30113728)
chr8 (203-252)||(13589188-13589237)
chr8 (205-249)||(36544902-36544946)
chr8 (96-136)||(39706872-39706912)
[»] chr6 (15 HSPs)
chr6 (17-201)||(9705992-9706178)
chr6 (17-145)||(5260184-5260313)
chr6 (17-146)||(6082617-6082747)
chr6 (17-201)||(20428516-20428702)
chr6 (201-255)||(33495943-33495997)
chr6 (45-145)||(30670133-30670234)
chr6 (205-249)||(607909-607953)
chr6 (205-249)||(5631568-5631612)
chr6 (101-170)||(2680958-2681027)
chr6 (205-249)||(5258638-5258682)
chr6 (205-249)||(9706526-9706570)
chr6 (207-249)||(14030558-14030600)
chr6 (205-249)||(10100345-10100389)
chr6 (209-249)||(20428124-20428164)
chr6 (205-249)||(30679224-30679268)
[»] chr3 (13 HSPs)
chr3 (17-201)||(52138045-52138231)
chr3 (17-201)||(51448588-51448774)
chr3 (81-157)||(9258168-9258244)
chr3 (205-249)||(25191129-25191173)
chr3 (201-249)||(47542199-47542247)
chr3 (86-153)||(19736502-19736569)
chr3 (205-252)||(30345277-30345324)
chr3 (71-146)||(38849366-38849441)
chr3 (205-249)||(28245187-28245231)
chr3 (205-249)||(38849844-38849888)
chr3 (86-153)||(19757320-19757387)
chr3 (208-246)||(52138553-52138591)
chr3 (205-249)||(51448197-51448241)
[»] scaffold0570 (1 HSPs)
scaffold0570 (205-249)||(2758-2802)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 14769517 - 14769701
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaataagaagaaaaaggttaagattgtttatattggagctatcaatgatat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769517 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaataagaagaaaaaggttaagattgtttatattggagctatcaatgatat 14769616  T
Q  117 gtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14769617 gtatgagagagcatcaactagtgtgaggacacgggatggggccaccgacaatttcccaaaacaatatgattgcaccaagggtcaa 14769701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 14770041 - 14770160
Alignment:
Q  201 atcatattcaagctggg-tggttgaaatggagaagagtctaaggtgttttatgtgaaatggtaatacctctcaaattaagggtaaattttattgaacaat 299  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14770041 atcatattcaagctggggtggttgaaatggagaagagtgtaaggtgttttatgtgaaatggtaatacctctcaaattaagggtaaattttattgaacaat 14770140  T
Q  300 tgtaaaaccggcgatgttgt 319  Q
    ||||||||||||||||||||    
T  14770141 tgtaaaaccggcgatgttgt 14770160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 24584671 - 24584485
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||  | |||||||||||||||||| |  |  ||||||||  ||||| |||||  |||||  |||||||||| ||||    
T  24584671 gatttggagaaggcgtatgatagagtttccagagagattttgtggaaaaccctggagaagaaaggggttaggattgcctatatcagagctatcaaggata 24584572  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||| ||||| ||| | ||||||||| |||| | | ||||| | ||||||| ||||||||||||||||||    
T  24584571 tgtatgagggagcttcgactactgtgaagacgcaggatggggctaccgaagattttcccataacaataggattgcaccaagggtcaa 24584485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 16291943 - 16292116
Alignment:
Q  30 cgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagc 128  Q
    ||||||||| |||| | ||||||||||||||||||    |  ||||||||  ||||| |||||  |||||| |  ||||||| |||||||||||||||||    
T  16291943 cgtatgatagagtatcgagagagattttgtggaaaatcctggagaagaaaggggttaggattgcctatattaggactatcaaggatatgtatgagagagc 16292042  T
Q  129 ttcaactagtgtgaggacacgggatggggccaccgacaa-tttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||| |||||||||||||||| ||||||| | ||||| || ||||| | |||| || ||||||| ||||||||||    
T  16292043 ttcgactagtgtgaggacacaggatgggactaccgaaaattttcccataacattaggattgcatcaagggtcaa 16292116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 2609745 - 2609931
Alignment:
Q  17 gatttggagaagacgtatgataaagtagct-agagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgat 114  Q
    |||||||| ||| ||||||||| ||| ||| ||||||||||||||||||||     ||||||||  ||| | |||||  |||||| | |||||||| |||    
T  2609745 gatttggaaaaggcgtatgatagagt-gctgagagagattttgtggaaagccccggagaagaaaggggtaaggattgcctatattagggctatcaaggat 2609843  T
Q  115 atgtatgagagagcttcaactagtgtgaggacacgggatggggccacc-gacaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||||||||||||||||| | |||||||||||| | ||||||| | |||  | | ||||| | ||||||| ||||||||||||||||||    
T  2609844 atgtatgagagagcttcgattagtgtgaggacgcaggatgggactaccaaagattttcccataacaataggattgcaccaagggtcaa 2609931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 2610274 - 2610325
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 252  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  2610274 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttatg 2610325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 38453628 - 38453497
Alignment:
Q  71 agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatt 169  Q
    ||||||||  ||||| |||||  |||||| | |||||||| |||||||||||||||| ||| |||||||||||||| | |||||||   |||| | | ||    
T  38453628 agaagaaaggggttaggattgcctatattagggctatcaaggatatgtatgagagagtttcgactagtgtgaggacgcaggatgggattaccgaagattt 38453529  T
Q  170 tccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||| | ||||||| ||||||||||||||||||    
T  38453528 tcccataacaataggattgcaccaagggtcaa 38453497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 45368691 - 45368504
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagatttt-gtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgat 114  Q
    ||||| |||||| ||||||||| |||| ||||||||||||| |||||||||  |  |||||||   ||| | |||||  |||||| |||||||| | |||    
T  45368691 gattttgagaaggcgtatgatagagtacctagagagatttttgtggaaagccctggagaagaatggggtgaggattgcctatattagagctatccaggat 45368592  T
Q  115 atgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||||||||| ||||||| |||||||||||||  | ||||||||  |||| | | ||||| | ||||||| || |||||||||||||||    
T  45368591 atgtatgagggagcttcgactagtgtgaggatgcaggatggggataccgtagattttcccataacaataggactgcaccaagggtcaa 45368504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 452681 - 452495
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| |||| |||| |||| | ||||||||||||||||||||     ||||||||  ||||| |||||  |||||| | ||||||||  |||    
T  452681 gatttggaaaaggcgtacgatagagtaccgagagagattttgtggaaagcccgggagaagaaaggggttaggattgcctatattagggctatcaagaata 452582  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||| ||| |||||||||||||| | ||||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  452581 tgtatgagggaggttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 45368156 - 45368112
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  45368156 tattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 45368112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 8180010 - 8180203
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagaga--ttttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatga 113  Q
    |||||||| ||||||||||||| |||| | |||||||  |||||||||||||  |  ||||||||  ||||| |||||   ||||| | |||||||| ||    
T  8180010 gatttggaaaagacgtatgatagagtaccgagagagagattttgtggaaagccctggagaagaaaggggttaggattgccaatattagggctatcaagga 8180109  T
Q  114 tatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaatcata 206  Q
    |||||| ||| ||||||| |||||||||||| | | ||||||  | |||| | | ||||| | ||||||| |||||| ||||||||||| ||||    
T  8180110 tatgtacgagggagcttcgactagtgtgaggtcgcaggatggaactaccgaagattttcccataacaataggattgcgccaagggtcaaccata 8180203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 17581215 - 17581268
Alignment:
Q  202 tcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    ||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||    
T  17581215 tcatattcaagttggatggttcaaatggagaagagtctcaggtgttttatgtga 17581268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 452154 - 452110
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  452154 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 452110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 4807342 - 4807386
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  4807342 tattcaagatgggtggttgaaatggagaagagtctcaggtgtttt 4807386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 11992638 - 11992594
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  11992638 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 11992594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 38453156 - 38453108
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||    
T  38453156 atcatattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 38453108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 41197760 - 41197716
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  41197760 tattcaagttgggtggttgaaatggagaagagtctcaggtgtttt 41197716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 37281388 - 37281451
Alignment:
Q  82 gttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgagga 145  Q
    |||| ||||| ||||||| || ||||||| ||||||||| || |||||||||||||||||||||    
T  37281388 gttaggattgattatattagaactatcaaggatatgtataagggagcttcaactagtgtgagga 37281451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 3865822 - 3865872
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||||||||||||||||||||||||||||||| || || |||||| |||||    
T  3865822 tattcaagctgggtggttgaaatggagaagagcctcagatgttttgtgtga 3865872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 8180530 - 8180561
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagag 236  Q
    ||||||||||||||||||||||||||||||||    
T  8180530 tattcaagctgggtggttgaaatggagaagag 8180561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 39287896 - 39287849
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaa 64  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  39287896 gatttggagaagacatgtgataaagtggctagagagatttagtggaaa 39287849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 3244183 - 3244139
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||    
T  3244183 tattcaagctgggtggtagaaatggagatgagcctcaggtgtttt 3244139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 24584142 - 24584110
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaa 233  Q
    ||||||||||||||||||||| |||||||||||    
T  24584142 atcatattcaagctgggtggtggaaatggagaa 24584110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 23907367 - 23907181
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||| |||||| |||||||||| ||||    
T  23907367 gatttggaaaaggcgtatgatagagtaccaagagagattttgtggaaagccctggagaagaaaggggttaggattgtctatattagagctatcaaggata 23907268  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  23907267 tgtatgagggagcttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 23907181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 53703827 - 53704013
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||  |||| | ||||||||||||||||||||  | |||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  53703827 gatttggaaaaggcgtatgattgagtaccgagagagattttgtggaaagccctgaagaagaaaggggttaggattgcctatattagggctatcaaggata 53703926  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||||| ||||||| | |||| | | |||||   ||||||| ||||||||||||||||||    
T  53703927 tgtatgagggagcttcgactagtgtgaggacacaggatgggactaccgaagattttcccgtaacaataggattgcaccaagggtcaa 53704013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 435449 - 435635
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||||||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  435449 gatttggaaaagacgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagggctatcaaggata 435548  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| || |||||||||||||||    
T  435549 tgtatgagggagcttcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggagtgcaccaagggtcaa 435635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 55769419 - 55769265
Alignment:
Q  45 ctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgag 143  Q
    ||||| ||||||||||||||||  || ||||||||  | ||| ||||| ||||||| |||||||||||||||||||| || ||||||| |||||| ||||    
T  55769419 ctagacagattttgtggaaagctctagagaagaaagggattaggattgcttatattagagctatcaatgatatgtat-agggagcttcgactagtttgag 55769321  T
Q  144 gacacgggatggggccaccgacaa-tttccgaaaacaatatgattgcaccaagggt 198  Q
    ||| |  ||||| ||||| ||||| ||||| | ||||||| |||||||||||||||    
T  55769320 gacgcaagatggagccacagacaattttcccataacaataggattgcaccaagggt 55769265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 55833675 - 55833521
Alignment:
Q  45 ctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgag 143  Q
    ||||| ||||||||||||||||  || ||||||||  | ||| ||||| ||||||| |||||||||||||||||||| || ||||||| |||||| ||||    
T  55833675 ctagacagattttgtggaaagctctagagaagaaagggattaggattgcttatattagagctatcaatgatatgtat-agggagcttcgactagtttgag 55833577  T
Q  144 gacacgggatggggccaccgacaa-tttccgaaaacaatatgattgcaccaagggt 198  Q
    ||| |  ||||| ||||| ||||| ||||| | ||||||| |||||||||||||||    
T  55833576 gacgcaagatggagccacagacaattttcccataacaataggattgcaccaagggt 55833521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 1778067 - 1777894
Alignment:
Q  31 gtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagc- 128  Q
    |||||||| |||| | ||||||||||||||||||||  |  ||||||||  |||||  ||||  |||||| | ||||||||||||||||||||| ||||     
T  1778067 gtatgatagagtatcaagagagattttgtggaaagcccttgagaagaaaggggttagaattgcctatattagggctatcaatgatatgtatgagggagct 1777968  T
Q  129 ttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||||||||||||||||||   ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  1777967 ttcaactagtgtgaggacgtaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 1777894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 33226955 - 33227003
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33226955 atcatattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 33227003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 48623592 - 48623463
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| |||  |||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  48623592 gatttggaaaaggtgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagggctatcaaagata 48623493  T
Q  116 tgtatgagagagcttcaactagtgtgagga 145  Q
    |||| ||| ||||||| |||||||||||||    
T  48623492 tgtacgagggagcttcgactagtgtgagga 48623463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 1777547 - 1777503
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  1777547 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 1777503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 23906833 - 23906789
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  23906833 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 23906789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 46583360 - 46583312
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || |||| ||||    
T  46583360 atcatattcaagctgggtggttgaaatggagaagagcctcaggtatttt 46583312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 31960350 - 31960315
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagag 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  31960350 atcatattcaagctgggtggttgaaatggagaagag 31960315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 41005617 - 41005662
Alignment:
Q  76 aaaaaggttaagattgtttatattggagctatcaatgatatgtatg 121  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||    
T  41005617 aaaaaggttaagattgcttatatttgagttatcaatgatatgtatg 41005662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 435979 - 436023
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||| |||||||||||||||||||| || |||||||||    
T  435979 tattcaagctgagtggttgaaatggagaagagcctcaggtgtttt 436023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 27450705 - 27450661
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  27450705 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 27450661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 43433668 - 43433712
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||| |||||||||||||||| || |||||||||    
T  43433668 tattcaagctgggtgattgaaatggagaagagcctcaggtgtttt 43433712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 48174625 - 48174581
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  48174625 tattcaagctaggtggttgaaatggagaagagcctcaggtgtttt 48174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 48623059 - 48623015
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||| || || |||||||||    
T  48623059 tattcaagctgggtggttgaaatggagaaaagcctcaggtgtttt 48623015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 53707544 - 53707588
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || || ||||||    
T  53707544 tattcaagctgggtggttgaaatggagaagagactcagatgtttt 53707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 56375040 - 56375084
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  56375040 tattcaagctgggtggttgaaattgagaagagcctcaggtgtttt 56375084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 44860328 - 44860435
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    ||||||||| || |||||||||  ||  ||||| ||||||||||||||||  || ||||||||  ||||| || ||| |||||| |||||||| | ||||    
T  44860328 gatttggaggaggcgtatgata--gtgcctagacagattttgtggaaagccttagagaagaaaggggttaggaatgtctatattcgagctatctaggata 44860425  T
Q  116 tgtatgagag 125  Q
    ||||||||||    
T  44860426 tgtatgagag 44860435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 50286721 - 50286754
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtc 238  Q
    |||||||||||||||||||||||| |||||||||    
T  50286721 tattcaagctgggtggttgaaatgaagaagagtc 50286754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 35690055 - 35690087
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagt 237  Q
    |||||||| ||||||||||||||||||||||||    
T  35690055 tattcaagttgggtggttgaaatggagaagagt 35690087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 41427140 - 41427188
Alignment:
Q  88 attgtttatattggagctatcaatgatatgtatgagagagcttcaacta 136  Q
    |||| ||||||| |||||||||| |||||||||||| ||| ||||||||    
T  41427140 attgcttatatttgagctatcaaagatatgtatgagggagattcaacta 41427188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 33350871 - 33350685
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| |||  |||||||| |||| | ||||||||||||||||||||  |  ||||||||| ||||| |||||  |||||| | |||||||| ||||    
T  33350871 gatttggaaaaggggtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaagggttaggattgcctatattagggctatcaaggata 33350772  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||||||||||| |||||||||| ||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  33350771 tgtatgagagagcttcgactagtgtgaagacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 33350685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 32629825 - 32630011
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||  | |||||||||  ||| | |||||  ||||||  ||||||| | ||||    
T  32629825 gatttggagaaggcgtatgatagagtacctagagagattttgtggaaagccctgaagaagaaaggggtgaggattgcctatattaaagctatccaggata 32629924  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| ||  |||||||||| | ||||||||  |||| | | ||||| | ||||||| || |||||||||||||||    
T  32629925 tgtatgagggagcttcgacctgtgtgaggacgcaggatggggataccgtagattttcccataacaataggactgcaccaagggtcaa 32630011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 36870389 - 36870203
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||||||  |  | || |||  ||||| |||||  |||||| |||  ||||| ||||    
T  36870389 gatttggagaaggcgtatgatagagtgcctagagagattttgtggaaagccctggaaaataaaggggttaggattgcctatattagagtcatcaaggata 36870290  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| |||||||||||||||||||||  | ||||||||  |||| | | ||||| | ||||||| ||||||||||||||||||    
T  36870289 tgtatgagggagcttcaactagtgtgaggatgcaggatggggataccgcaaattttcccataacaataggattgcaccaagggtcaa 36870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 39907444 - 39907258
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  39907444 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagggctatcaaggata 39907345  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||  | ||||||| | || | | | ||||| | ||||||| ||||||||||||||||||    
T  39907344 tgtatgagggagcttcgactagtgtgaggatgcaggatgggactacggaagattttcccataacaataggattgcaccaagggtcaa 39907258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 46356916 - 46356730
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||  |  ||||||||  |||||  ||||  |||||| | |||||||| ||||    
T  46356916 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttagaattgcctatattagggctatcaaggata 46356817  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccacc-gacaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||||| | |||  | | ||||| | ||||||| ||||||||||||||||||    
T  46356816 tgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccaaagattttcccataacaataggattgcaccaagggtcaa 46356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 11593170 - 11593356
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||  ||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  11593170 gatttggaaaaggcgtatgatagagtaccgagagagattttgtgacaagccctggagaagaaaggggttaggattgcctatattagggctatcaaggata 11593269  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  11593270 tgtatgagggagcttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 11593356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 36651211 - 36651397
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | |||||||||| |||||||||  |  ||||| ||  ||||| |||||  |||||| | |||||||| ||||    
T  36651211 gatttggaaaaggcgtatgatagagtaccgagagagatttcgtggaaagccctggagaagtaaggggttaggattgcctatattagggctatcaaggata 36651310  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||| ||| |||||||||||||| | ||||||| | |||| |   ||||| | ||||||| ||||||||||||||||||    
T  36651311 tgtatgagggagtttcgactagtgtgaggacgcaggatgggactaccgaagtttttcccataacaataggattgcaccaagggtcaa 36651397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 49028563 - 49028684
Alignment:
Q  81 ggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaaca 179  Q
    ||||| |||||  |||||| | |||||||| |||||||||||| ||||||| ||||||||||||||   ||||||| | |||| | | ||||| | ||||    
T  49028563 ggttaggattgcctatattagggctatcaaggatatgtatgagggagcttcgactagtgtgaggacgtaggatgggactaccgaagattttcccataaca 49028662  T
Q  180 atatgattgcaccaagggtcaa 201  Q
    ||| ||||||||||||||||||    
T  49028663 ataggattgcaccaagggtcaa 49028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 38606256 - 38606441
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    ||||| |||||| |||||||| | ||| || |||||||||||||||||||  |  ||||||||  | | | |||||  |||||| |||||||| | ||||    
T  38606256 gattttgagaaggcgtatgatga-gtacctggagagattttgtggaaagccctggagaagaaagggatgaggattgcctatattagagctatccaagata 38606354  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | |||||||   |||| | | ||| ||| ||||||| || |||||||||||||||    
T  38606355 tgtatgagggagcttcgactagtgtgaggacgcaggatgggaataccgtagatttttcgataacaataggactgcaccaagggtcaa 38606441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 11593710 - 11593754
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  11593710 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 11593754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 36651744 - 36651788
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  36651744 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 36651788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 38606755 - 38606799
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  38606755 tattcaagctgggtggttgaaatggagaagagccttaggtgtttt 38606799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 31004973 - 31005017
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  31004973 tattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 31005017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 33350338 - 33350294
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  33350338 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 33350294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 34869166 - 34869214
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||| |||||||||| || ||| |||||    
T  34869166 atcatattcaagctgggtggttgaattggagaagagcctcaggcgtttt 34869214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 36869821 - 36869777
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || ||| |||||    
T  36869821 tattcaagctgggtggttgaaatggagaagagcctcaggggtttt 36869777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 37616666 - 37616710
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  37616666 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 37616710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 43281426 - 43281470
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || ||| |||||    
T  43281426 tattcaagctgggtggttgaaatggagaagagcctcaggcgtttt 43281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 46356383 - 46356339
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  46356383 tattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 46356339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 48919138 - 48919182
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||| ||||||||||||||||| || |||||||||    
T  48919138 tattcaagctgggtagttgaaatggagaagagcctcaggtgtttt 48919182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 418945 - 418891
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||| ||||||||||||||| ||||||||||||||| |||  | |||||||||||    
T  418945 atcagattcaagctgggtgggtgaaatggagaagagcctagagggttttatgtga 418891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 35906733 - 35906703
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaaga 235  Q
    |||||||||||||||||||||||||||||||    
T  35906733 tattcaagctgggtggttgaaatggagaaga 35906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 22346729 - 22346778
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagc 66  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||    
T  22346729 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagc 22346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 21517861 - 21517809
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgt 253  Q
    |||||||||||| |||||||||||||| |||||||| || || ||||| ||||    
T  21517861 atcatattcaagttgggtggttgaaatcgagaagagccttagatgtttaatgt 21517809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 43241446 - 43241260
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||||||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  43241446 gatttggaaaagacgtatgatagagtaccgagagagattttgtggaaagctctggagaagaaaggggttaggattgcctatattagggctatcaaggata 43241347  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  43241346 tgtatgagggagcttcgactagtgtgaggacgcacgatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 43241260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 49348445 - 49348274
Alignment:
Q  31 gtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagct 129  Q
    |||||||| |||| | ||||||||||||||||||||  |  ||||||||| ||||| |||||  |||||| | |||||||| |||||||||||| |||||    
T  49348445 gtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaagggttaggattgcctatattagggctatcaaggatatgtatgagggagct 49348346  T
Q  130 tcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtca 200  Q
    || |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| |||||||||||||||||    
T  49348345 tcgactagtgtgaggacgcatgatgggactaccgaagattttcccataacaataggattgcaccaagggtca 49348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 8671135 - 8671278
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagat---tgtttatattggagctatcaatg 112  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||| |  ||||||||  |||||  ||   ||| |||||| | |||||||| |    
T  8671135 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagcactggagaagaaaggggttagaataattgtctatattagggctatcaagg 8671234  T
Q  113 atatgtatgagagagcttcaactagtgtgaggacacgggatggg 156  Q
    ||||||||||| ||||||| |||||||||||||| | |||||||    
T  8671235 atatgtatgagggagcttcgactagtgtgaggacgcaggatggg 8671278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 51441829 - 51441643
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||  ||||||||| |||| |  |||||||||||||||||||  |  ||||||||  |||||  ||||  |||||| | |||||||| ||||    
T  51441829 gatttggaaaaagcgtatgatagagtatcgtgagagattttgtggaaagccctggagaagaaatgggttagaattgcctatattagggctatcaaggata 51441730  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| | |||||||||||| |  |||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  51441729 tgtatgagggagcttcgattagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 51441643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 43240917 - 43240869
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  43240917 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 43240869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 37463872 - 37463741
Alignment:
Q  71 agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccga-caatt 169  Q
    ||||||||  ||||| ||||| ||||| | |||||||||| ||| |||||||| ||||| |||||||||||||||  | ||| ||| | |||||  | ||    
T  37463872 agaagaaaggggttaggattgcttatactagagctatcaaggatgtgtatgagggagctgcaactagtgtgaggatgcaggaggggcctaccgatgattt 37463773  T
Q  170 tccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||| | ||||||| ||||||||||||||||||    
T  37463772 tcctataacaataggattgcaccaagggtcaa 37463741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 22089844 - 22089888
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  22089844 tattcaagctgggtggttgaaatggagaagagtctcagatgtttt 22089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 34828136 - 34828020
Alignment:
Q  31 gtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagct 129  Q
    |||||||| |||  ||| |||||||||||||||||   || |||||||| |||||| ||||| ||||||| || ||||| | |||||||||||| | ||     
T  34828136 gtatgatatagtgtctaaagagattttgtggaaagtcctagagaagaaagaggttaggattgcttatattcgatctatccaagatatgtatgagggggcc 34828037  T
Q  130 tcaactagtgtgaggac 146  Q
    || ||||||||||||||    
T  34828036 tccactagtgtgaggac 34828020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 45833777 - 45833907
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaataagaagaaaaag--gttaagattgtttatattggagctatcaatgat 114  Q
    |||||| ||||| |||| |||| |||  ||||||| ||||||||||||||  |||||  ||||||  |||| ||||||||||| | ||| |||||| |||    
T  45833777 gatttgaagaaggcgtacgatagagtgtctagagatattttgtggaaagcc-taagagaaaaaagatgttaggattgtttatactagagttatcaaagat 45833875  T
Q  115 atgtatgagagagcttcaactagtgtgaggac 146  Q
    || |||||| ||||||| |||| |||||||||    
T  45833876 atatatgagggagcttcgactaatgtgaggac 45833907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 49347925 - 49347881
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  49347925 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 49347881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 51441300 - 51441252
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||    
T  51441300 atcatattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 51441252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 32083277 - 32083230
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 252  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||    
T  32083277 tattcaagctgggtggttgaaatggagaagagcctcaggtgttctatg 32083230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 32405528 - 32405400
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||  |||||||||||||||||||||| ||| ||||||||  |||||  |||| ||||||| ||||||| || ||||    
T  32405528 gatttggaaaag-cgtatgatagagtgtctagagagattttgtggaaagccatagagaagaaaggggttagaattgcttatattagagctataaaggata 32405430  T
Q  116 tgtatgagagagcttcaactagtgtgagga 145  Q
     ||| | | ||||||  |||||| ||||||    
T  32405429 cgtacgcgggagctttgactagtttgagga 32405400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 1210495 - 1210539
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||| ||||||| || |||||||||    
T  1210495 tattcaagctgggtggttgaaatgaagaagagcctgaggtgtttt 1210539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 7813732 - 7813840
Alignment:
Q  36 ataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaac 134  Q
    |||||||  ||||||||||||| |||||| || || ||||||||   |||| || || ||||||| ||| |||||| || ||||||||||||||||| ||    
T  7813732 ataaagtgtctagagagattttatggaaaacactagagaagaaatgtgttacgactgcttatattagagttatcaaggacatgtatgagagagcttcgac 7813831  T
Q  135 tagtgtgag 143  Q
    |||| ||||    
T  7813832 tagtatgag 7813840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 8671670 - 8671714
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||| ||||||||||||| || |||||||||    
T  8671670 tattcaagctgggtggttaaaatggagaagagactcaggtgtttt 8671714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 9592484 - 9592528
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||    
T  9592484 tattcaagttgggtggttgaaatggagaagagtctcgggtgtttt 9592528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 30202662 - 30202618
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  30202662 tattcaagccgggtggttgaaatggagaagagcctcaggtgtttt 30202618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 35829392 - 35829272
Alignment:
Q  82 gttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgac-aatttccgaaaacaa 180  Q
    |||| ||||| |||| || ||||||||||  ||||| ||||| |  |||||||||||||||| ||||  ||||||| | ||||| | ||||| | |||||    
T  35829392 gttatgattgcttatgttcgagctatcaaatatatgcatgaggggacttcaactagtgtgagtacacaagatggggtcgccgacgattttcccataacaa 35829293  T
Q  181 tatgattgcaccaagggtcaa 201  Q
    || ||||||||||||| ||||    
T  35829292 taggattgcaccaaggatcaa 35829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 51601808 - 51601852
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  51601808 tattcaagctgggtggtggaaatagagaagagtctcaggtgtttt 51601852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 8391525 - 8391564
Alignment:
Q  210 aagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  8391525 aagctgggtggttgaaatggagaagagcctcaggtgtttt 8391564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 19936272 - 19936322
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||||||||||||||||||||||||| ||||  || | |||||||||||||    
T  19936272 tattcaagctgggtggttgaaatggataagaacctcaagtgttttatgtga 19936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 51234360 - 51234414
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||| ||||||| |||||||||||||||||||| || || |||| ||||||||||    
T  51234360 atcaaattcaagttgggtggttgaaatggagaatagcctcaggtcttttatgtga 51234414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 30688 - 30873
Alignment:
Q  20 ttggagaagacgtatgataaagtagctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgatatgt 118  Q
    ||||| ||| ||||||||| |||| | ||||||||||||||||||||    |||||||||  ||||| |||||  |||||| | |||||||| |||||||    
T  30688 ttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagccccgaagaagaaaggggttaggattgcctatattagggctatcaaggatatgt 30787  T
Q  119 atgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaatc 203  Q
    ||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| ||||||||| || |||||||||||||||||    
T  30788 atgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccaaaacaataggactgcaccaagggtcaatc 30873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 31218 - 31262
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  31218 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 31262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 24177756 - 24177927
Alignment:
Q  32 tatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagctt 130  Q
    ||||||| |||| | ||||||||||||||||||||  |  ||||||||  |||||  ||||  |||||| |||||||||| |||||||||||| ||||||    
T  24177756 tatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttagcattgcctatattagagctatcaaggatatgtatgagggagctt 24177855  T
Q  131 caactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    | |||||||||||||| | ||||||| | |||| | | ||||||| ||||||| ||||||||||||||||||    
T  24177856 cgactagtgtgaggacgcaggatgggactaccgaagattttccgataacaataggattgcaccaagggtcaa 24177927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 20318209 - 20318394
Alignment:
Q  18 atttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatat 116  Q
    ||||||| ||| ||||||||| |||| |  |||||||||||||||||||  |  ||||||||  ||||| |||||  ||||||   |||||||| |||||    
T  20318209 atttggaaaaggcgtatgatagagtaccgggagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattatggctatcaaggatat 20318308  T
Q  117 gtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||||||| ||| ||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  20318309 gtatgagggagtttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 20318394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 1288589 - 1288468
Alignment:
Q  81 ggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaaca 179  Q
    ||||| |||||  |||||| | |||||||| |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||    
T  1288589 ggttatgattgcctatattagggctatcaaggatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataaca 1288490  T
Q  180 atatgattgcaccaagggtcaa 201  Q
    ||| ||||||||||||||||||    
T  1288489 ataggattgcaccaagggtcaa 1288468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 1274560 - 1274668
Alignment:
Q  94 tatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcacc 192  Q
    |||||| | |||||||| |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | |||||||  ||||||||    
T  1274560 tatattagggctatcaaagatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcacc 1274659  T
Q  193 aagggtcaa 201  Q
    |||||||||    
T  1274660 aagggtcaa 1274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 3301095 - 3301207
Alignment:
Q  46 tagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgagg 144  Q
    |||||||||||||||||||||  |  ||||||||  ||| | |||||  |||||| ||| |||| |||||||||||||| ||||||| ||||||||||||    
T  3301095 tagagagattttgtggaaagctttggagaagaaaggggtgaggattgcctatattagagttatccatgatatgtatgagggagcttcgactagtgtgagg 3301194  T
Q  145 acacgggatgggg 157  Q
    || | ||||||||    
T  3301195 acgcaggatgggg 3301207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 20318737 - 20318785
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  20318737 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 20318785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 2076539 - 2076353
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||| ||||  || ||||  ||  ||||| |||||  |||||    |||||||| ||||    
T  2076539 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggcaagccctagagaaataaggggttaggattgcctatatcatggctatcaaggata 2076440  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| |  |||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  2076439 tgtatgagggagcttcgactagtgtgaggacgcatgatgagactaccgaagattttcccacaacaataggattgcaccaagggtcaa 2076353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 12493331 - 12493241
Alignment:
Q  112 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  12493331 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaatattttcccataacaataggattgcaccaagggtcaa 12493241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 1275015 - 1275059
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  1275015 tattcaagctgggtggttgaaatgaagaagagcctaaggtgtttt 1275059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 10639047 - 10639091
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  10639047 tattcaagctgggtggttgaaatggagaagagccttaggtgtttt 10639091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 12492919 - 12492875
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  12492919 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 12492875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 36200528 - 36200582
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||||||| ||| ||||||||||||||||||||||| || | |||||||||||||    
T  36200528 atcatatttaagttgggtggttgaaatggagaagagactcatgtgttttatgtga 36200582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 3394460 - 3394504
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||| ||| || |||||||||    
T  3394460 tattcaagctgggtggttgaaatggagatgagcctcaggtgtttt 3394504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17212485 - 17212533
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaag 65  Q
    |||||| |||||||||||||||||||  ||||||||||||| |||||||    
T  17212485 gatttgaagaagacgtatgataaagtgcctagagagattttatggaaag 17212533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 24178270 - 24178318
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||| ||||||||||||||||||||||| || | |||||||    
T  24178270 atcatattcaagttgggtggttgaaatggagaagagcctcaagtgtttt 24178318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 28977389 - 28977345
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||    
T  28977389 tattcaagctgggtggttgaaatggagaagagcctcgggtgtttt 28977345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 7605754 - 7605809
Alignment:
Q  94 tatattggagctatcaatgatatgtatgagagag-cttcaactagtgtgaggacac 148  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||||| |||||||    
T  7605754 tatattcgagctatcaatgatatgtatgagagagactttgactagtgttaggacac 7605809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 3096922 - 3096976
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||| ||||||| |||||||||||||||||  |||| || |||||||||||||||    
T  3096922 atcaaattcaagttgggtggttgaaatggatgagagccttaggtgttttatgtga 3096976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 20077353 - 20077299
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    ||||| |||| | ||| ||||||||||||||||||| || |||||||||||||||    
T  20077353 atcattttcaggttggatggttgaaatggagaagagcctcaggtgttttatgtga 20077299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 2076006 - 2075962
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  2076006 tattcaagttgggtggttgaaatgaagaagagcctcaggtgtttt 2075962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 3301599 - 3301643
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||| |||| ||| || |||||||||    
T  3301599 tattcaagctgggtggttgaaatagagatgagcctcaggtgtttt 3301643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 34272772 - 34272816
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||| ||||||||||||| || |||||||||    
T  34272772 tattcaagttgggtggttaaaatggagaagagcctcaggtgtttt 34272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 13323 - 13135
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||  |||||||||||||||||||||   |  |||||||  ||||||||||||  |||||| |||||||||| ||||    
T  13323 gatttggagaaggcgtatgatagagttcctagagagattttgtggaaagtcctggagaagaacgaggttaagattgcctatattagagctatcaaggata 13224  T
Q  116 tg--tatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    ||  |||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  13223 tgtatatgagggagcttcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 13135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 36566306 - 36566120
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  36566306 gatttggaaaaggcgtatgatagagtatcgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagggctatcaaggata 36566207  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||| | | || | | | ||||| | ||||||| ||||||||||||||||||    
T  36566206 tgtatgagggagcttcgactagtgtgaggacgcaggatgagactactgaagattttcccataacaataggattgcaccaagggtcaa 36566120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 15216336 - 15216207
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaataagaagaaaaaggttaagattgtttatattggagctatcaatgatat 116  Q
    |||||| | ||| ||||||||| |||| ||||| |||||||||||||| | || ||||||||  ||  | |||||  |||||| |||||||| |||||||    
T  15216336 gatttgaataaggcgtatgatagagtacctagatagattttgtggaaatccatgagaagaaaggggcgaggattgcctatattagagctatctatgatat 15216237  T
Q  117 gtatgagagagcttcaactagtgtgaggac 146  Q
     |||||| ||||||| ||||||||||||||    
T  15216236 atatgagggagcttcgactagtgtgaggac 15216207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 36544447 - 36544555
Alignment:
Q  94 tatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcacc 192  Q
    |||||| | |||||||| ||||| |||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| |||||||||    
T  36544447 tatattagggctatcaaggatatatatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcacc 36544546  T
Q  193 aagggtcaa 201  Q
    |||||||||    
T  36544547 aagggtcaa 36544555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 4033030 - 4032982
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  4033030 atcatattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 4032982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 36565773 - 36565729
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  36565773 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 36565729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 10824609 - 10824570
Alignment:
Q  216 ggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10824609 ggtggttgaaatggagaagagtctcaggtgttttatgtga 10824570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 37077515 - 37077565
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||| |||||    
T  37077515 tattcaagctaagtggttgaaatggagaagagtctcaggtgttttgtgtga 37077565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 43732355 - 43732404
Alignment:
Q  206 attcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    ||||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  43732355 attcaagttgggtggttgaaatggagaagagtctcaagtgttatatgtga 43732404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 39946607 - 39946651
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||| ||||||||||||||||||| || |||||||||    
T  39946607 tattcaagctggatggttgaaatggagaagagccttaggtgtttt 39946651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 42854536 - 42854492
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  42854536 tattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 42854492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 30113728 - 30113678
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    ||||||||||   |||||||||||||||||||||  |||||||||||||||    
T  30113728 tattcaagctaaatggttgaaatggagaagagtcgcaggtgttttatgtga 30113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 13589188 - 13589237
Alignment:
Q  203 catattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 252  Q
    |||||||||| ||| ||||||||||||||||||| || | ||||||||||    
T  13589188 catattcaaggtggatggttgaaatggagaagagcctgatgtgttttatg 13589237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 36544902 - 36544946
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||    
T  36544902 tattcaagttgggtggttgaaatggataagagcctcaggtgtttt 36544946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 39706872 - 39706912
Alignment:
Q  96 tattggagctatcaatgatatgtatgagagagcttcaacta 136  Q
    |||| |||||||||| |||||||||||| ||||||||||||    
T  39706872 tattagagctatcaaagatatgtatgagggagcttcaacta 39706912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 9705992 - 9706178
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||  |  ||||||||  ||| | |||||  || ||| ||||| || | ||||    
T  9705992 gatttggagaaggcgtatgatagagtacctagagagattttgtggaaagccctgtagaagaaaggggtgaggattgcctaaattagagctttccaggata 9706091  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||| ||  |||| | | ||||| | |||||||||| |||||||||||||||    
T  9706092 tgtatgagggagcttcgactagtgtgaggacgcaggatgaggataccgtagattttcccataacaatatgactgcaccaagggtcaa 9706178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 5260313 - 5260184
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||||||| ||||||||| |||| |||||||||||| |||||||||  || | ||||||  ||| | ||||| ||||||| |||||||  | ||||    
T  5260313 gatttggagaaggcgtatgatagagtacctagagagatttagtggaaagccctagaaaagaaaggggtgatgattgcttatattagagctatataggata 5260214  T
Q  116 tgtatgagagagcttcaactagtgtgagga 145  Q
    |||||||| |||||||||||||||||||||    
T  5260213 tgtatgagggagcttcaactagtgtgagga 5260184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 6082617 - 6082747
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| |||  |||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| || ||||||| ||||    
T  6082617 gatttggaaaaggtgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagaactatcaaggata 6082716  T
Q  116 tgtatgagagagcttcaactagtgtgaggac 146  Q
    |||||||| ||||||| ||||||||||||||    
T  6082717 tgtatgagggagcttcgactagtgtgaggac 6082747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 20428702 - 20428516
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||| ||||| ||||||||| |||| ||||||||||||||||||||||  |  ||||||||  ||| | |||||  |||||| |||||||| | ||||    
T  20428702 gatttgtagaaggcgtatgatagagtacctagagagattttgtggaaagccctggagaagaaaggggtgaggattgcctatattagagctatccaggata 20428603  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||| | ||||||| |||||||||||||    ||||||||  |||| | | ||||| | ||||||| || |||||||||||||||    
T  20428602 tgtatgtgggagcttcgactagtgtgaggaagtaggatggggataccgtatattttcccataacaataggactgcaccaagggtcaa 20428516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 33495943 - 33495997
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 255  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||| |||||    
T  33495943 atcatattcaagctggatggttgaaatggagaagagtctcagatgttttgtgtga 33495997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 30670133 - 30670234
Alignment:
Q  45 ctagagagattttgtggaaagcaat-aagaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgag 143  Q
    |||||||||||||||||||||   | ||||||||| ||||||||||||  |||||| |||||||| | ||||||||| || ||| ||  |||||||||||    
T  30670133 ctagagagattttgtggaaagtcctgaagaagaaagaggttaagattgcctatattagagctatccaggatatgtataagggagttttgactagtgtgag 30670232  T
Q  144 ga 145  Q
    ||    
T  30670233 ga 30670234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 607909 - 607953
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  607909 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 607953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 5631568 - 5631612
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  5631568 tattcaagctgggtggttgaaatggagaagagtctcgggtgtttt 5631612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 2681027 - 2680958
Alignment:
Q  101 gagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaattt 170  Q
    |||||||||| |||||| ||||  ||||||| ||||||||||| |||| ||||||||| ||||| |||||    
T  2681027 gagctatcaaggatatgcatgaaggagcttcgactagtgtgagaacacaggatggggctaccgaaaattt 2680958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 5258682 - 5258638
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  5258682 tattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 5258638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 9706526 - 9706570
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||  | |||||||||    
T  9706526 tattcaagctgggtggttgaaatggagaagagcatcaggtgtttt 9706570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 14030558 - 14030600
Alignment:
Q  207 ttcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||    
T  14030558 ttcaaactgggtggttgaaatggagaatagtctcaggtgtttt 14030600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10100389 - 10100345
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||| |||||||||||| || | |||||||    
T  10100389 tattcaagctgggtggttggaatggagaagagcctcatgtgtttt 10100345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 20428164 - 20428124
Alignment:
Q  209 caagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  20428164 caagctgggtggttgaaatggagaagagcctcgggtgtttt 20428124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 30679224 - 30679268
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||| |||||||||||||| |||||||| || |||||||||    
T  30679224 tattcaagttgggtggttgaaatagagaagaggctcaggtgtttt 30679268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 52138045 - 52138231
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||  |  ||||||||  ||||| |||||  |||||| | |||||||| ||||    
T  52138045 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagccctggagaagaaaggggttaggattgcctatattagggctatcaaggata 52138144  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | |||||||  |||||||||||| ||||    
T  52138145 tgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcaccaaggatcaa 52138231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 51448774 - 51448588
Alignment:
Q  17 gatttggagaagacgtatgataaagtagctagagagattttgtggaaagcaata-agaagaaaaaggttaagattgtttatattggagctatcaatgata 115  Q
    |||||||| ||| ||||||||| |||| | ||||||||||||||||||||     ||||||||  ||||| | |||  |||||| | |||||||| ||||    
T  51448774 gatttggaaaaggcgtatgatagagtaccgagagagattttgtggaaagcccgggagaagaaaggggttaggtttgcctatattagggctatcaaggata 51448675  T
Q  116 tgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 201  Q
    |||||||| ||||||| ||| |||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  51448674 tgtatgagggagcttcgactggtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 51448588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 9258168 - 9258244
Alignment:
Q  81 ggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggatgggg 157  Q
    ||||| |||||| |||||| ||||||| || |||||||||||||||||||| |||| |||||||||||  |||||||    
T  9258168 ggttaggattgtctatattagagctataaacgatatgtatgagagagcttcgactattgtgaggacacatgatgggg 9258244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 25191129 - 25191173
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  25191129 tattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 25191173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 47542247 - 47542199
Alignment:
Q  201 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  47542247 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 47542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 19736502 - 19736569
Alignment:
Q  86 agattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggat 153  Q
    ||||||||||| || |||||||||| |||||||||||| ||||||| |||||| ||||||||| ||||    
T  19736502 agattgtttatgttagagctatcaaggatatgtatgagggagcttcgactagtatgaggacacaggat 19736569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 30345277 - 30345324
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 252  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30345277 tattcaagttgggtggttgaaatggagaagagtctcaggtgttttatg 30345324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 38849366 - 38849441
Alignment:
Q  71 agaagaaaaaggttaagattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggac 146  Q
    ||||||||  ||||| |||||  |||||| |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  38849366 agaagaaaggggttatgattgcctatattagagctatcaaggatatgtatgagggagcttcgactagtgtgaggac 38849441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 28245187 - 28245231
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  28245187 tattcaagctgggtggttgaaatggagaagagtctcagttgtttt 28245231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 38849844 - 38849888
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  38849844 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 38849888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 19757320 - 19757387
Alignment:
Q  86 agattgtttatattggagctatcaatgatatgtatgagagagcttcaactagtgtgaggacacgggat 153  Q
    ||||||||||| || |||||||||| |||||||| ||| ||||||| |||||| ||||||||| ||||    
T  19757320 agattgtttatgttagagctatcaaggatatgtacgagggagcttcgactagtatgaggacacaggat 19757387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 52138553 - 52138591
Alignment:
Q  208 tcaagctgggtggttgaaatggagaagagtctaaggtgt 246  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  52138553 tcaagctgggtggttgaaatggagaagagtctcaggtgt 52138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 51448241 - 51448197
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||    
T  51448241 tattcaagctgggtggttgaaatggagaagagcctcgggtgtttt 51448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 2802 - 2758
Alignment:
Q  205 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 249  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  2802 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 2758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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