View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_43 (Length: 329)
Name: NF0063_2D_low_43
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_43
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 4752224 - 4752443
Alignment:
Q
47
atatatgcaataattgaaagaaaagcaagagagtttaaatatggtaccattctgatttagcttgcaaagaatcaagtggtaaacgatgaccaagcaaatt
146
Q
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
4752224
atatatgcaataattgaaagagaagcaagagagttcaaatatggtaccattctgatttagcttgcaaagaatcaagtggtaaacgatgaccaagcaaatt
4752323
T
Q
147
tcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcgcacaca
246
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
4752324
tcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcg--caca
4752421
T
Q
247
caccacaatcaaccaaatccct
268
Q
||||||||||||||||||||||
T
4752422
caccacaatcaaccaaatccct
4752443
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10587093 - 10587143
Alignment:
Q
1
atacttggaattcttcttcctgccatcaaaatccatgtcaaaaacaatata
51
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||
T
10587093
atacttggaattcttcttcctgccatcaaaatccatgtcaaaaacaatata
10587143
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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