View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_45 (Length: 327)
Name: NF0063_2D_low_45
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_45
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 98 - 308
Target Start/End: Complemental strand, 33611735 - 33611526
Alignment:
Q
98
gtaagattgttgattcaactcacactgatgtggatatctcattgatggatgatcttatgtaaacaacaaacctcaactcacctaattt-gttttttctat
196
Q
||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||| |||
T
33611735
gtaagatcgttgattcaactcacactgatttgaacatctcattgatggatgatcttatgtaaacaactaagctcagctcacctaattttgttttttgtat
33611636
T
Q
197
caaaagaaattagagaaaggaggaatgatatttatggacaagtgagttgcagcccccacctggatttcaatgtcaactagccagcttttggggccatctt
296
Q
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
T
33611635
caaaagaaattagagaa-ggaggaatgatatttatggacaagtgagttgcagcccccacctggatttcaatgtcaaatagccagc-tttggggccatctt
33611538
T
Q
297
caagtagcttca
308
Q
||||||||||||
T
33611537
caagtagcttca
33611526
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 33612433 - 33612347
Alignment:
Q
3
ttcgtacaccataacattcgtaggtcagcctaactgtcaatcgactatctagtggatcaatcatgaaattcacaaacgtctaatttt
89
Q
|||||||||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||| |||||||||| ||| ||||
T
33612433
ttcgtacaccataacattcgtaggtcggcctaactatcgatcgtctatctagtgggtcaatcatgaatttcacaaacgcctattttt
33612347
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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