View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_47 (Length: 326)
Name: NF0063_2D_low_47
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 2112978 - 2112664
Alignment:
| Q |
1 |
aatcaataattaagtatgtggtcatgattttaatgagtggtattacaatcaagatttnnnnnnn-tgatattttgtcaacaaaaaagaaaatacatcttt |
99 |
Q |
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| T |
2112978 |
aatcaataattaaatatgtagtcatgattttaatgagtggcattgcaatcaagattttaaaaaaatgatattttgtcaacaaaaaagaaaatacatattt |
2112879 |
T |
|
| Q |
100 |
ttcatttgtcaaatagaccgactaaatgcaattcaaccaaataaaacaaagcttctcacaaaaatgttttccgtcatgtcgcaaccaacatgatggctga |
199 |
Q |
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| T |
2112878 |
t-catttgtcaaatagaccgactaaatgcaagtcaaccaaataaaacaaagcttctcacaaaaatgctttccgtcatgtcgcaa-caaaatgatggctga |
2112781 |
T |
|
| Q |
200 |
gcatgaacaaagctcaatttactaaaacactactaataggagtattttgctttccatttactttaaaatagagc-------gctgttatttattttagga |
292 |
Q |
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| T |
2112780 |
gcatgaacaaagctcaatttactaaaacactgctaataggagtattttgctgtccatttactttaaaatagagcatataaagctgttatttattttaggg |
2112681 |
T |
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| Q |
293 |
ttaattaagtttttagt |
309 |
Q |
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| T |
2112680 |
ttaattaagtttttagt |
2112664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2113068 - 2113035
Alignment:
| Q |
1 |
aatcaataattaagtatgtggtcatgattttaat |
34 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
2113068 |
aatcaataattaagtatgtggtcatgagtttaat |
2113035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 28388767 - 28388795
Alignment:
| Q |
278 |
ttatttattttaggattaattaagttttt |
306 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28388767 |
ttatttattttaggattaattaagttttt |
28388795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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