View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_49 (Length: 317)
Name: NF0063_2D_low_49
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_49
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 2492104 - 2491820
Alignment:
Q
20
aagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaata
119
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2492104
aagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatc
2492005
T
Q
120
tgtatttttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactggaagatcat
219
Q
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2492004
tgta--tttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactggaagatcat
2491907
T
Q
220
tttaacnnnnnnnctaactgtagatgcttgttcaaaagcagctctaagatatttttatatggctacacttattttccttgtgatgtc
306
Q
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
2491906
tttaactttttttctaactgtagatgcttgttgaaaagcagctctaagatatttttatatggctacacttactttccttgtgatgtc
2491820
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 2488812 - 2488636
Alignment:
Q
27
ttacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatatgtattt
126
Q
|||| ||| |||| |||||| ||||| |||||| ||||||||||| ||||||||| ||| ||||||||||||||| |||||| ||| |||| ||| |
T
2488812
ttacatggtgaaccagatacatgtactttttgcgtttatttaagttgagaggagtatgtatttaacttataagaaagtctttgttggagaataagta--t
2488715
T
Q
127
ttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaat
205
Q
||||| || || ||| | |||| ||||| || ||| ||||||||||| || | |||||| | || |||||||||||||
T
2488714
ttataaagaagctaaccacggacgtttaggagataaaatgttaacttatataacaagctactgtttaaagacttgaaat
2488636
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 2495150 - 2495102
Alignment:
Q
156
aagttaagatgttaacttacatgagaagctatt-attaaaagacttgaa
203
Q
||||||||||||||||||| |||| |||||||| ||||||||||||||
T
2495150
aagttaagatgttaacttatatgacaagctattgtttaaaagacttgaa
2495102
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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