View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_51 (Length: 287)

Name: NF0063_2D_low_51
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_51
NF0063_2D_low_51
[»] chr4 (1 HSPs)
chr4 (1-269)||(1792685-1792953)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1792953 - 1792685
Alignment:
Q  1 tcagatgcattgtttgtggatggatcgaaatcggaggatgtaggtttcatgcagnnnnnnnnaatctagaaaaaccaaatataaaatttgcgtgaatgca 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  1792953 tcagatgcattgtttgtcgatggatcaaaatcggaggatgtaggtttcatgcagttttttttaatctagaaaaaccaaatataaaatttgcgtgaatgca 1792854  T
Q  101 ggaaatctgcatgaattggaatccctattaaagggcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagct 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792853 ggaaatctgcatgaattggaatccctattaaagcgcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagct 1792754  T
Q  201 taggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792753 taggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaag 1792685  T

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