View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_52 (Length: 287)
Name: NF0063_2D_low_52
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_52
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1792953 - 1792685
Alignment:
Q
1
tcagatgcattgtttgtggatggatcgaaatcggaggatgtaggtttcatgcagnnnnnnnnaatctagaaaaaccaaatataaaatttgcgtgaatgca
100
Q
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
1792953
tcagatgcattgtttgtcgatggatcaaaatcggaggatgtaggtttcatgcagttttttttaatctagaaaaaccaaatataaaatttgcgtgaatgca
1792854
T
Q
101
ggaaatctgcatgaattggaatccctattaaagggcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagct
200
Q
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1792853
ggaaatctgcatgaattggaatccctattaaagcgcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcattcacacacaagct
1792754
T
Q
201
taggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaag
269
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1792753
taggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaag
1792685
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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