View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_54 (Length: 285)
Name: NF0063_2D_low_54
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 45270391 - 45270656
Alignment:
| Q |
1 |
ataccagtattcatattcacctgcggtgatccgtctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagcttt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
45270391 |
ataccagtattcatattcaccagcggtgatccgtctgcgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagcttt |
45270490 |
T |
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| Q |
101 |
ggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270491 |
ggatcaaggtggcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttg |
45270590 |
T |
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| Q |
201 |
gtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg |
266 |
Q |
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| T |
45270591 |
gtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatgccacagcttg |
45270656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 45293577 - 45293766
Alignment:
| Q |
77 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
176 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45293577 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45293676 |
T |
|
| Q |
177 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg |
266 |
Q |
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| T |
45293677 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg |
45293766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 45302537 - 45302726
Alignment:
| Q |
77 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
176 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45302537 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45302636 |
T |
|
| Q |
177 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg |
266 |
Q |
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| T |
45302637 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg |
45302726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 45282236 - 45282435
Alignment:
| Q |
76 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt |
175 |
Q |
| |
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||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||| |
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| T |
45282236 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt |
45282335 |
T |
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| Q |
176 |
tggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttgatgtccatc |
275 |
Q |
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| T |
45282336 |
tgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatc |
45282435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 45273992 - 45274192
Alignment:
| Q |
76 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggt-accggagataacacagttgcggtagaattgcctg |
174 |
Q |
| |
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||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |||| || ||| ||||||||| | |||||| |
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| T |
45273992 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctg |
45274091 |
T |
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| Q |
175 |
ttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttgatgtccat |
274 |
Q |
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||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |
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| T |
45274092 |
ttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccat |
45274191 |
T |
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| Q |
275 |
c |
275 |
Q |
| |
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| |
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| T |
45274192 |
c |
45274192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 38587600 - 38587640
Alignment:
| Q |
226 |
aaagcagacatatctccttggtttctaaatgccacagcttg |
266 |
Q |
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| T |
38587600 |
aaagcagacatgtctccttggtttctaaatgccactgcttg |
38587640 |
T |
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