View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_54 (Length: 285)
Name: NF0063_2D_low_54
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_54
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 45270391 - 45270656
Alignment:
Q
1
ataccagtattcatattcacctgcggtgatccgtctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagcttt
100
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
T
45270391
ataccagtattcatattcaccagcggtgatccgtctgcgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagcttt
45270490
T
Q
101
ggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttg
200
Q
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45270491
ggatcaaggtggcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttg
45270590
T
Q
201
gtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg
266
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
T
45270591
gtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatgccacagcttg
45270656
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 45293577 - 45293766
Alignment:
Q
77
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt
176
Q
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||
T
45293577
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt
45293676
T
Q
177
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg
266
Q
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45293677
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg
45293766
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 45302537 - 45302726
Alignment:
Q
77
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt
176
Q
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||
T
45302537
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt
45302636
T
Q
177
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg
266
Q
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45302637
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttg
45302726
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 45282236 - 45282435
Alignment:
Q
76
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt
175
Q
||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || ||||
T
45282236
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt
45282335
T
Q
176
tggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttgatgtccatc
275
Q
|| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
T
45282336
tgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatc
45282435
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 45273992 - 45274192
Alignment:
Q
76
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggt-accggagataacacagttgcggtagaattgcctg
174
Q
||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |||| || ||| ||||||||| | ||||||
T
45273992
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctg
45274091
T
Q
175
ttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttgatgtccat
274
Q
||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
T
45274092
ttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccat
45274191
T
Q
275
c
275
Q
|
T
45274192
c
45274192
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 38587600 - 38587640
Alignment:
Q
226
aaagcagacatatctccttggtttctaaatgccacagcttg
266
Q
||||||||||| ||||||||||||||||||||||| |||||
T
38587600
aaagcagacatgtctccttggtttctaaatgccactgcttg
38587640
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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