View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_56 (Length: 280)

Name: NF0063_2D_low_56
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_56
NF0063_2D_low_56
[»] chr6 (12 HSPs)
chr6 (104-259)||(15576189-15576344)
chr6 (44-194)||(16527772-16527913)
chr6 (44-172)||(1755666-1755794)
chr6 (105-194)||(30355260-30355349)
chr6 (44-161)||(12972509-12972626)
chr6 (88-187)||(15574842-15574941)
chr6 (103-151)||(12974270-12974318)
chr6 (194-245)||(13194291-13194342)
chr6 (64-109)||(7837121-7837166)
chr6 (69-109)||(17695705-17695745)
chr6 (195-264)||(6091920-6091989)
chr6 (69-109)||(11126599-11126639)
[»] chr1 (26 HSPs)
chr1 (44-194)||(23223284-23223434)
chr1 (44-180)||(21451921-21452057)
chr1 (48-194)||(30675360-30675507)
chr1 (44-143)||(15299012-15299111)
chr1 (103-194)||(50047113-50047204)
chr1 (103-180)||(12424020-12424097)
chr1 (44-172)||(31313425-31313553)
chr1 (115-194)||(26657420-26657499)
chr1 (195-266)||(50048239-50048310)
chr1 (102-187)||(11770093-11770178)
chr1 (103-187)||(25730670-25730754)
chr1 (104-185)||(25777932-25778013)
chr1 (103-194)||(12810256-12810345)
chr1 (119-171)||(34935297-34935349)
chr1 (126-168)||(25266462-25266504)
chr1 (194-264)||(34522115-34522185)
chr1 (103-187)||(8247756-8247840)
chr1 (64-109)||(22624837-22624882)
chr1 (115-172)||(25965488-25965545)
chr1 (69-109)||(21914855-21914895)
chr1 (101-161)||(26101987-26102047)
chr1 (197-259)||(17836791-17836853)
chr1 (186-264)||(23224619-23224697)
chr1 (197-259)||(30676667-30676729)
chr1 (69-109)||(21912072-21912112)
chr1 (195-259)||(27682929-27682993)
[»] chr5 (26 HSPs)
chr5 (44-187)||(17027400-17027543)
chr5 (44-172)||(24841626-24841754)
chr5 (69-172)||(11274445-11274547)
chr5 (44-129)||(12029493-12029578)
chr5 (103-187)||(25594791-25594875)
chr5 (111-194)||(17382127-17382210)
chr5 (103-194)||(30072111-30072201)
chr5 (45-181)||(22754829-22754958)
chr5 (102-177)||(22967951-22968026)
chr5 (127-194)||(24517310-24517377)
chr5 (194-259)||(11273683-11273748)
chr5 (111-194)||(12340106-12340187)
chr5 (103-180)||(22229741-22229818)
chr5 (44-161)||(22643989-22644105)
chr5 (194-266)||(17768641-17768713)
chr5 (195-259)||(19571048-19571112)
chr5 (69-109)||(20860430-20860470)
chr5 (69-109)||(34133866-34133906)
chr5 (49-96)||(11274548-11274595)
chr5 (195-245)||(24518964-24519014)
chr5 (102-172)||(24846192-24846262)
chr5 (103-179)||(15205577-15205653)
chr5 (195-264)||(18451061-18451130)
chr5 (69-109)||(22938049-22938089)
chr5 (199-259)||(25682147-25682207)
chr5 (100-172)||(26070404-26070475)
[»] chr2 (21 HSPs)
chr2 (44-187)||(28278522-28278664)
chr2 (102-194)||(21505231-21505323)
chr2 (48-172)||(39730324-39730448)
chr2 (44-169)||(31449830-31449955)
chr2 (47-161)||(32276638-32276752)
chr2 (115-172)||(32619586-32619643)
chr2 (194-266)||(31000597-31000669)
chr2 (103-194)||(35707735-35707826)
chr2 (103-194)||(25473969-25474060)
chr2 (103-170)||(18236418-18236485)
chr2 (112-194)||(1733042-1733123)
chr2 (92-142)||(29769610-29769660)
chr2 (44-141)||(27918127-27918224)
chr2 (44-108)||(22388934-22388997)
chr2 (69-109)||(1504312-1504352)
chr2 (69-109)||(20379377-20379417)
chr2 (69-109)||(25873169-25873209)
chr2 (69-109)||(25886157-25886197)
chr2 (196-264)||(28455128-28455196)
chr2 (120-172)||(31914047-31914099)
chr2 (69-109)||(45456266-45456306)
[»] chr4 (22 HSPs)
chr4 (44-178)||(1676403-1676537)
chr4 (44-178)||(1682931-1683065)
chr4 (44-180)||(1696675-1696809)
chr4 (105-180)||(15192137-15192212)
chr4 (44-131)||(34850752-34850839)
chr4 (119-194)||(34864383-34864458)
chr4 (106-170)||(12111446-12111510)
chr4 (101-172)||(18897921-18897992)
chr4 (102-187)||(5906819-5906905)
chr4 (89-155)||(10576371-10576437)
chr4 (195-265)||(47023552-47023622)
chr4 (194-257)||(20717941-20718004)
chr4 (103-165)||(9288142-9288204)
chr4 (194-258)||(12840697-12840761)
chr4 (195-259)||(22219945-22220009)
chr4 (103-194)||(25315323-25315414)
chr4 (221-264)||(24580004-24580047)
chr4 (124-187)||(25050164-25050227)
chr4 (205-256)||(30797703-30797754)
chr4 (111-155)||(10320350-10320394)
chr4 (104-172)||(17339927-17339995)
chr4 (69-109)||(19826667-19826707)
[»] chr3 (22 HSPs)
chr3 (45-193)||(21017750-21017899)
chr3 (44-169)||(13911138-13911263)
chr3 (103-186)||(25919564-25919647)
chr3 (44-143)||(8402693-8402792)
chr3 (103-194)||(17637035-17637126)
chr3 (44-108)||(5632668-5632732)
chr3 (70-121)||(11521039-11521090)
chr3 (134-194)||(33914654-33914714)
chr3 (112-186)||(12573231-12573305)
chr3 (112-186)||(13549695-13549769)
chr3 (107-172)||(16970177-16970241)
chr3 (103-180)||(19219317-19219394)
chr3 (200-264)||(10343000-10343064)
chr3 (69-109)||(10883984-10884024)
chr3 (103-170)||(18065761-18065828)
chr3 (103-192)||(1475374-1475463)
chr3 (106-172)||(31477705-31477771)
chr3 (198-259)||(33913400-33913461)
chr3 (69-109)||(16223572-16223612)
chr3 (69-109)||(18541774-18541814)
chr3 (69-109)||(31283869-31283909)
chr3 (69-109)||(47053927-47053967)
[»] chr7 (40 HSPs)
chr7 (44-180)||(7494584-7494720)
chr7 (48-194)||(20470902-20471049)
chr7 (48-187)||(21471674-21471813)
chr7 (103-194)||(29544451-29544542)
chr7 (44-155)||(9761537-9761646)
chr7 (48-145)||(3269123-3269220)
chr7 (103-199)||(2632523-2632619)
chr7 (103-172)||(7142030-7142099)
chr7 (93-155)||(9801996-9802057)
chr7 (194-264)||(21544679-21544749)
chr7 (105-169)||(2353357-2353421)
chr7 (103-194)||(20446171-20446262)
chr7 (103-195)||(23124833-23124924)
chr7 (195-266)||(7494484-7494555)
chr7 (48-171)||(16536689-16536811)
chr7 (44-171)||(16577387-16577513)
chr7 (44-171)||(16588149-16588275)
chr7 (48-171)||(16628851-16628973)
chr7 (44-126)||(1074341-1074422)
chr7 (44-105)||(7956058-7956119)
chr7 (104-161)||(18496498-18496555)
chr7 (103-155)||(21545929-21545984)
chr7 (194-262)||(7143571-7143639)
chr7 (194-266)||(7776350-7776422)
chr7 (69-109)||(13287676-13287716)
chr7 (69-109)||(26137034-26137074)
chr7 (200-259)||(9071392-9071451)
chr7 (195-266)||(18494555-18494626)
chr7 (190-245)||(21473039-21473094)
chr7 (115-180)||(7815267-7815332)
chr7 (99-145)||(22532784-22532830)
chr7 (221-262)||(7152116-7152157)
chr7 (195-256)||(14074486-14074547)
chr7 (195-256)||(14384514-14384575)
chr7 (69-109)||(2506786-2506826)
chr7 (69-109)||(4596918-4596958)
chr7 (69-109)||(15170730-15170770)
chr7 (69-109)||(19154909-19154949)
chr7 (69-109)||(20754308-20754348)
chr7 (69-109)||(39270239-39270279)
[»] chr8 (28 HSPs)
chr8 (47-194)||(24120107-24120254)
chr8 (44-194)||(16052369-16052519)
chr8 (52-172)||(22894648-22894768)
chr8 (96-186)||(28252481-28252571)
chr8 (44-194)||(28901432-28901582)
chr8 (44-194)||(10866861-10867011)
chr8 (86-194)||(13082029-13082137)
chr8 (48-129)||(5570305-5570386)
chr8 (113-194)||(12956431-12956512)
chr8 (113-194)||(14977199-14977280)
chr8 (48-131)||(28973490-28973573)
chr8 (111-172)||(11310318-11310379)
chr8 (102-194)||(16054225-16054317)
chr8 (70-155)||(29291670-29291755)
chr8 (103-194)||(32239219-32239310)
chr8 (102-200)||(6358629-6358727)
chr8 (194-256)||(12957559-12957621)
chr8 (194-259)||(32240446-32240511)
chr8 (103-194)||(29047408-29047499)
chr8 (196-259)||(13305658-13305721)
chr8 (194-245)||(13803096-13803147)
chr8 (101-155)||(30851230-30851284)
chr8 (64-109)||(26829427-26829472)
chr8 (221-266)||(26853601-26853646)
chr8 (69-109)||(25180687-25180727)
chr8 (69-109)||(29765357-29765397)
chr8 (119-171)||(30543711-30543763)
chr8 (69-109)||(33878232-33878272)
[»] scaffold0282 (1 HSPs)
scaffold0282 (48-170)||(22661-22783)
[»] scaffold1026 (1 HSPs)
scaffold1026 (46-165)||(1952-2071)
[»] scaffold0171 (3 HSPs)
scaffold0171 (103-180)||(6128-6205)
scaffold0171 (195-267)||(7349-7421)
scaffold0171 (110-172)||(21336-21398)
[»] scaffold0386 (2 HSPs)
scaffold0386 (103-179)||(8816-8892)
scaffold0386 (118-187)||(13170-13239)
[»] scaffold0002 (1 HSPs)
scaffold0002 (103-180)||(446937-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (112-172)||(27068-27128)
[»] scaffold0048 (2 HSPs)
scaffold0048 (69-109)||(24001-24041)
scaffold0048 (69-109)||(28239-28279)
[»] scaffold0210 (1 HSPs)
scaffold0210 (44-106)||(25216-25278)
[»] scaffold0084 (1 HSPs)
scaffold0084 (69-110)||(28544-28585)
[»] scaffold0321 (1 HSPs)
scaffold0321 (69-109)||(3841-3881)
[»] scaffold0270 (1 HSPs)
scaffold0270 (69-109)||(1054-1094)
[»] scaffold0198 (1 HSPs)
scaffold0198 (64-108)||(3979-4023)
[»] scaffold0072 (1 HSPs)
scaffold0072 (69-109)||(38382-38422)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 104 - 259
Target Start/End: Complemental strand, 15576344 - 15576189
Alignment:
Q  104 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatggacg 203  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15576344 gatgatggagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgttgatggacg 15576245  T
Q  204 aaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  15576244 aaattggcaagtgcatcaaatcgtaacaagtaataaagtagtcagtttatcgttct 15576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 16527772 - 16527913
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||| |||||||||   ||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||    
T  16527772 attctaacgtcttgctat---gttgcttgaggacaagaaccggtttaagtttggggttgtgatggcagagcatcatataatatttttggctatgttttta 16527868  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||||      |||||||||| ||||||| |||||| ||||||    
T  16527869 gtacttttctttg------aagacaaataagatgagagttagaggagttgt 16527913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 1755794 - 1755666
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||| || ||| |||| || ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  1755794 attctaacttctcgcaattttgttgctagaggacaggtaatagtttaagtttggggttgtgatgacggagcatcatatgatatatcaggttatgttttta 1755695  T
Q  144 gtacttttctttgaatttaaagacaaata 172  Q
    ||  |||||||||||||| ||||||||||    
T  1755694 gttattttctttgaatttgaagacaaata 1755666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 30355260 - 30355349
Alignment:
Q  105 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||  ||||| ||||||| |||||| ||||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgt 30355349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 12972626 - 12972509
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||| |||||||| || | ||| || | ||| |||  |||||||||||||| |||||||  || |||||| |||||||||||| ||||||||||    
T  12972626 attctaacttgttgctattttggtgctttagaagaagcaacaatttaagtttggggtagtgatgatagaacatcatttgatatttttggctatgttttta 12972527  T
Q  144 gtacttttctttgaattt 161  Q
    ||  ||||||||| ||||    
T  12972526 gttattttctttgcattt 12972509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 15574842 - 15574941
Alignment:
Q  88 ttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 186  Q
    |||||||||||||| ||||||| || |||||||||| | |||||| ||| || ||||||| ||||||||| |||| |||||||||| ||||||| |||||    
T  15574842 ttaagtttggggttatgatgacagaacatcatatgaca-ttttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttaga 15574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 12974270 - 12974318
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt 151  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||    
T  12974270 tgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 13194342 - 13194291
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 245  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||||||    
T  13194342 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagt 13194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 7837121 - 7837166
Alignment:
Q  64 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  7837121 tgtttcttgaggacaagtaacagtttaagtttgaggttgtgatgac 7837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 17695705 - 17695745
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  17695705 cttgaggacaaggaatggtttaagtttggggttgtgatgac 17695745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 6091920 - 6091989
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    ||||||||||||||  ||||| ||| ||||||||| || |||||||||||  || |||||||||| ||||    
T  6091920 tgatggacgaaattgacaagtgcattaaatcgtaaaaaataataaagtagaaagtttatcgttctccaca 6091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 11126639 - 11126599
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  11126639 cttgaggactagaaatggttcaagtttggggttgtgatgac 11126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 23223284 - 23223434
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||| |||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  23223284 attctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatgacggagcatcatatgatgtttttggctatgttttaa 23223383  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||| ||||  |||||| || |||| || |||||| ||||||    
T  23223384 gtacttttctttgcattttgagacaattaagatgggagttagaggagttgt 23223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 21452057 - 21451921
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  21452057 attctaacttcttgctattgtgtttcttgaggacaagtaatagtttaagtttggggttgtgatgacatagcatcatatgaca-ttttggctatgttttta 21451959  T
Q  144 gtac-ttttctttgaatttaaagacaaataggatgaga 180  Q
    |||| ||||||||| |||| |||||||||| |||||||    
T  21451958 gtacgttttctttgcatttgaagacaaataagatgaga 21451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 194
Target Start/End: Original strand, 30675360 - 30675507
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    |||||||||||||| || || |||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||| |||||| | ||||||||||| ||    
T  30675360 taacttcttgctatagttttgcttgaggacaagcaactgtttaagttcggtgttgtgatgacagagcatcatatgacattttttgctatgtttttagaac 30675459  T
Q  148 ttttc-tttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||| |||  ||||  ||||||||| ||||| |||||||| ||||||    
T  30675460 ttttctttttcatttgtagacaaataagatgaaaattagaggagttgt 30675507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 15299111 - 15299012
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||||| | || |||||||| ||  |||| ||||| |||| | ||||||||| ||| |||||||||||||||| |||||||||||||    
T  15299111 attctaacttcttgctatttttttgcttgaggagaatcaacgatttaaatttgcgattgtgatgatggaacatcatatgatattttaggttatgttttta 15299012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 50047113 - 50047204
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||  | |||||||||||||||| |||||||||  |||||||||||| |||| |||||||||| ||||| || ||||| ||||||    
T  50047113 tgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgt 50047204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 12424097 - 12424020
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgaga 180  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  12424097 tgatgacagagcatcatatgata-ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgaga 12424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 31313425 - 31313553
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttt-tt 142  Q
    ||||||| ||||||||||| |||| | |||||||||| ||| |||||||||||||||||||| || ||  |||||||||||| ||| ||  |||||| ||    
T  31313425 attctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtgacgatgg-tcatcatatgataatttaggccatgtttctt 31313523  T
Q  143 agtacttttctttgaatttaaagacaaata 172  Q
    |||  ||||||||| |||| ||| ||||||    
T  31313524 agttattttctttgcatttgaaggcaaata 31313553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 26657420 - 26657499
Alignment:
Q  115 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||| | |||||  ||||| ||||||    
T  26657420 atcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgt 26657499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 50048310 - 50048239
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    |||||||||||||| |||||| ||| ||||  ||||||||||||||||||| || |||||||||| ||||||    
T  50048310 tgatggacgaaattggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagg 50048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 11770178 - 11770093
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    |||||||  |||||||| ||||||||||||  |||||||||| |||| ||||||| |||| |||| ||||| ||||||| ||||||    
T  11770178 gtgatgatagagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagag 11770093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 25730754 - 25730670
Alignment:
Q  103 tgatgacggagcatcatatgatatttttg-gttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||| ||||||||||||||||||||  | |||||||| |||||||||||||| |||| || ||||||| ||||||| ||||||    
T  25730754 tgatgacagagcatcatatgatatttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagag 25730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 25778013 - 25777932
Alignment:
Q  104 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattag 185  Q
    |||||||||| |||||||||||||||| | |||||| ||||| |||||||||| |||| || | ||||| ||||||| ||||    
T  25778013 gatgacggagtatcatatgatattttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagagttag 25777932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 12810256 - 12810345
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||| ||||||||  |||||||||   ||||||||||||||||||||||  ||||||||||||||| | |||||  ||||| ||||||    
T  12810256 tgatgacgaagcatcat--gatattttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgt 12810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 34935349 - 34935297
Alignment:
Q  119 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 171  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||||||||    
T  34935349 tatgatattttaggctatgtttttagttattttctttgaatttaaagacaaat 34935297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 25266504 - 25266462
Alignment:
Q  126 tttttggttatgtttttagtacttttctttgaatttaaagaca 168  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  25266504 tttttggttatgtttttagtacttttctttgcatttgaagaca 25266462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 34522185 - 34522115
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    |||||||| |||||| |||||| ||  |||||||||||||||||||| |||| || |||||||||| ||||    
T  34522185 ttgatggaagaaattggcaagtgcaccaaatcgtaacaagtaataaaatagtaagtttatcgttctccaca 34522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 8247840 - 8247756
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||| ||||||||||||| | |||||  |||||||||| || |||||||||| |||| |||||||||| ||||||| ||||||    
T  8247840 tgatgacagagcatcatatgaca-ttttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagag 8247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 22624837 - 22624882
Alignment:
Q  64 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  22624837 tgttacttgaggacaagcaaccgtttaagtttggggttgtgatgac 22624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 25965545 - 25965488
Alignment:
Q  115 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||||||||| |||| |||||||||||||||  ||||||||| | |||||||||||||    
T  25965545 atcatatgatgttttaggttatgtttttagttattttctttgtacttaaagacaaata 25965488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 21914895 - 21914855
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  21914895 cttgaggacaagtaacggttcaagtttggggttgtgatgac 21914855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 26101987 - 26102047
Alignment:
Q  101 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 161  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||  ||||||||| ||||    
T  26101987 tgtgatgatggagcatcatatgatattttaggcgatgtttttagttattttctttgcattt 26102047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 17836791 - 17836853
Alignment:
Q  197 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    |||||||||||| |||||| ||  ||||| |||||||||| |||||||| || ||||||||||    
T  17836791 atggacgaaattggcaagtgcaccaaatcataacaagtaagaaagtagtaagtttatcgttct 17836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 23224697 - 23224619
Alignment:
Q  186 agtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    |||| ||| |||||| ||||||| |||||| | | ||||||||||||||||||| ||||| || ||||| |||| ||||    
T  23224697 agtaattggtgatgggcgaaattggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagtttatcattctccaca 23224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 30676729 - 30676667
Alignment:
Q  197 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||| ||  ||||||||  ||||||||||||||||||||||||| |  ||||||||||    
T  30676729 atggacgaacttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatttatcgttct 30676667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 21912112 - 21912072
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  21912112 cttgaggacaaataacggttcaagtttggggttgtgatgac 21912072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 27682993 - 27682929
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||||||||  ||||| ||  ||| ||||||||||||||||||||| || |||| |||||    
T  27682993 tgatggacgaaattgacaagtgcaccaaaccgtaacaagtaataaagtagtaagtttattgttct 27682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 17027400 - 17027543
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||| |||||| |||||| |||||||| ||| || |  |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||    
T  17027400 attctaactttttgctaatgtgttgcttgaggataagcaatgacttaagtttggggttgtgacgagggagcatcatatgacatttttggctatgttttta 17027499  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||||||||| |||||||||||| || ||||||| ||||||    
T  17027500 gtacttttctttgcatttaaagacaattaagatgagagttagag 17027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 24841626 - 24841754
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||||| |||||||||||||||||||||| ||| || || || ||||||||||||||| ||||||||||||| |||||| | ||||||||||    
T  24841626 attctaacttcttgttattgtgtttcttgaggacaagcaacagtgtacgtatggggttgtgatgacagagcatcatatgacattttttgctatgttttta 24841725  T
Q  144 gtacttttctttgaatttaaagacaaata 172  Q
    ||||| ||||||| |||| ||||||||||    
T  24841726 gtactattctttgcatttgaagacaaata 24841754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 11274547 - 11274445
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagaca 168  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||||||||||| ||||||||||     
T  11274547 cttgaggacaagcaacggtttaagtttggggttgtgatgaaggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaaagacc 11274449  T
Q  169 aata 172  Q
    ||||    
T  11274448 aata 11274445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 12029493 - 12029578
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 129  Q
    ||||| ||||||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||    
T  12029493 attcttacttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatgaccgagcatcatatgatatttt 12029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 25594875 - 25594791
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||| |||||||||||  ||||||||| |||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||    
T  25594875 tgatgacagagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagag 25594791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 17382210 - 17382127
Alignment:
Q  111 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||||||||||| | ||||| |||||||||||| |||| |||| |||||||||| ||||||| |||||| ||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgt 17382127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 30072111 - 30072201
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||| |||||| || |||||| || |||||||| |||||||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  30072111 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgt 30072201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 22754829 - 22754958
Alignment:
Q  45 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttag 144  Q
    ||||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||  |||      |||| ||||| || |||||||||||    
T  22754829 ttctaactttttgctattgtgttgcttgtggacaagaaacattttaagtttgggtttcttatgatagag------atgacatttt-ggatatgtttttag 22754921  T
Q  145 tacttttctttgaatttaaagacaaataggatgagaa 181  Q
    ||| |||||||| ||||||||||||||| ||||||||    
T  22754922 tacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 22968026 - 22967951
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatg 177  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| || | |||||||||| ||||    
T  22968026 gtgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatg 22967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 24517310 - 24517377
Alignment:
Q  127 ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||| |||||||||||||| |||| ||||| |||| |||||||||| |||||||||||||| ||||||    
T  24517310 ttttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgt 24517377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 11273683 - 11273748
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||| ||||| |||||| ||| |||| |||||||||||||||||||| || ||||||||||    
T  11273683 ttgatggacaaaattggcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcgttct 11273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 12340187 - 12340106
Alignment:
Q  111 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||| ||||| || ||||||||||||| ||||||||| |||| |||||||||| | ||||| |||||| ||||||    
T  12340187 gagcatcatatgacatttt-ggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgt 12340106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 22229741 - 22229818
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttt-tagtacttttctttgaatttaaagacaaataggatgaga 180  Q
    ||||||| ||||||||||||  ||||| || |||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  22229741 tgatgacagagcatcatatgtcatttt-ggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 22644105 - 22643989
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||| |||||||||| ||| |||| |||||||| ||| |||||||||||||| || |||||||||  ||  | ||||| |||||||| | ||| ||||||    
T  22644105 attccaacttcttgccattttgttgcttgaggataagcaacggtttaagttt-ggtttgtgatgattgaataacatataatatttttaggtatattttta 22644007  T
Q  144 gtacttttctttgaattt 161  Q
    ||  ||||||||| ||||    
T  22644006 gttattttctttgtattt 22643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 17768713 - 17768641
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    ||||||||||||||| ||||||  |  ||||||||| ||||||||||||||| || |||| ||||| ||||||    
T  17768713 ttgatggacgaaattggcaagtaaaccaaatcgtaagaagtaataaagtagtaagtttattgttctccacagg 17768641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 19571112 - 19571048
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    |||||||| ||||| |||||| ||  |||||||||||| |||||||||||| || ||||||||||    
T  19571112 tgatggactaaatttgcaagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgttct 19571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 20860470 - 20860430
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  20860470 cttgaggacaagcaacagtttaagtttggggttgtgatgac 20860430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 34133906 - 34133866
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  34133906 cttgaggacaaggaacggttcaagtttggggttgtgatgac 34133866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 11274595 - 11274548
Alignment:
Q  49 aacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 96  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  11274595 aacttcttgctactgtgttgcttgaggacaagtaacagtttaagtttg 11274548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 24519014 - 24518964
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 245  Q
    |||||||||||| | ||||||  || |||||||||||||||||||||||||    
T  24519014 tgatggacgaaactggcaagtgtatcaaatcgtaacaagtaataaagtagt 24518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 24846192 - 24846262
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||||||||||||| ||||||| |||| || ||| ||||||||   |||||||| |||| ||||||||||    
T  24846192 gtgatgacggagcatgatatgatgttttaggctatatttttagttactttctttgcatttgaagacaaata 24846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 15205577 - 15205653
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgag 179  Q
    ||||||| ||||||||||||||| |||||  |||||||||||||  |||| |||| ||||||| ||||||| ||||||    
T  15205577 tgatgacagagcatcatatgata-ttttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag 15205653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 18451061 - 18451130
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    |||||||||||||| ||||||  |  | |||||||||||||||||||| || || |||||||||| ||||    
T  18451061 tgatggacgaaattggcaagtggaccagatcgtaacaagtaataaagttgtaagtttatcgttctccaca 18451130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 22938089 - 22938049
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  22938089 cttgaggacaaggaatggttcaagtttggggttgtgatgac 22938049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 25682207 - 25682147
Alignment:
Q  199 ggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||| |  ||||||||||    
T  25682207 ggacgaaattggcaagtgcactaaatcgtaacaagtaataaaatagtaattttatcgttct 25682147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 26070404 - 26070475
Alignment:
Q  100 ttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||| |||| ||| ||||||||||| ||||||| ||||||||||||  ||||||||| |||| ||| ||||||    
T  26070404 ttgtaatgatggaacatcatatgat-tttttggctatgtttttagttattttctttgcattttaaggcaaata 26070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 28278664 - 28278522
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||| ||||||||||||| |||||||||||||||||||| | |||| |||||    
T  28278664 attctaacttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgtgatgacagagcatcatatgatattttttgctatg-tttta 28278566  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||||||||| |||| ||| |||||| || |||| ||||||    
T  28278565 gtacttttctttgcatttgaaggcaaataagaagagagttagag 28278522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 21505323 - 21505231
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  21505323 gtgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgt 21505231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 39730324 - 39730448
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    ||||||||||||||| |||| |||||||||||  |||  ||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||      
T  39730324 taacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatggcggagcatcatataatattttaggctatgtttttagtta 39730423  T
Q  148 ttttctttgaatttaaagacaaata 172  Q
    ||||||||  | || ||||||||||    
T  39730424 ttttctttataattgaagacaaata 39730448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 31449830 - 31449955
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||||||||||||| |||| ||| |||||||||||  | ||||||||||    
T  31449830 attctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgatggagtatcttatgatattttaagctatgttttta 31449929  T
Q  144 gtacttttctttgaatttaaagacaa 169  Q
    ||  |||| |||| |||| |||||||    
T  31449930 gttattttatttgcatttgaagacaa 31449955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 32276752 - 32276638
Alignment:
Q  47 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 146  Q
    |||| |||||| |||| |||| | | |||||||||||| ||||||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||     
T  32276752 ctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgtgatgaaggaacatcatatggtacttttggatatgtttttagtt 32276653  T
Q  147 cttttctttgaattt 161  Q
     ||||||||| ||||    
T  32276652 attttctttgcattt 32276638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 32619586 - 32619643
Alignment:
Q  115 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaata 32619643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 31000669 - 31000597
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||||||||||| || ||||| |||| ||||||    
T  31000669 ttgatggacgaaatttgcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagg 31000597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 35707735 - 35707826
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| ||||||||||||| | |||||  |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  35707735 tgatgacagagcatcatatgaca-ttttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgt 35707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 25473969 - 25474060
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| ||||||||||||| | |||||| |||||||||||||| |||| |||  |||| |||||||||| ||||||| |||||| ||||||    
T  25473969 tgatgacagagcatcatatgaca-ttttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgt 25474060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 18236485 - 18236418
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 170  Q
    |||||||||||||||||||||||||||  | ||||||||||||  ||||||||| |||| ||| ||||    
T  18236485 tgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaa 18236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 1733042 - 1733123
Alignment:
Q  112 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  |||| |||||||||  ||||||| |||||| ||||||    
T  1733042 agcatcatatgacattttag-ttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgt 1733123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 29769610 - 29769660
Alignment:
Q  92 gtttggggttgtgatgacggagcatcatatgatatttttggttatgttttt 142  Q
    |||||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  29769610 gtttggggttatgatgacggagcatcatataatattttaggctatgttttt 29769660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 27918224 - 27918127
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttt 141  Q
    ||||||||||||| ||| ||| ||  |||| |||||| |||  ||||||||||||| |||||||| |||  | |||||||||||||| | ||||||||    
T  27918224 attctaacttcttactaatgttttgtttgatgacaagcaacaatttaagtttggggatgtgatgatggaataacatatgatatttttagctatgtttt 27918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 22388997 - 22388934
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 108  Q
    ||||||||||||||||||| | |||||||| |||||| |||| | ||||||||||||||| ||||    
T  22388997 attctaacttcttgctatttt-tttcttgatgacaagcaacgatataagtttggggttgtaatga 22388934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 1504352 - 1504312
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1504352 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1504312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 20379417 - 20379377
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  20379417 cttgaggacaagcaacagtctaagtttggggttgtgatgac 20379377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 25873169 - 25873209
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  25873169 cttgaggacaaggaatggttcaagtttggggttgtgatgac 25873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 25886157 - 25886197
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  25886157 cttgaggacaagcaacaatttaagtttggggttgtgatgac 25886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 28455128 - 28455196
Alignment:
Q  196 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    ||||||||||||| |||||| ||  ||||| ||||||||| ||||||||| || |||| ||||| ||||    
T  28455128 gatggacgaaattggcaagtacaccaaatcataacaagtattaaagtagtaagtttatggttctccaca 28455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 31914099 - 31914047
Alignment:
Q  120 atgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||| |||||| | ||||||||||||| ||||||||| |||| ||||||||||    
T  31914099 atgacattttttgctatgtttttagtatttttctttgcatttgaagacaaata 31914047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 45456266 - 45456306
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  45456266 cttgaggacaaggaatggttcaagtttggggttgtgatgac 45456306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 1676537 - 1676403
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1676537 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1676438  T
Q  144 gtacttttctttgaatttaaagacaaataggatga 178  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1676437 gtacttttctttacatttgaagacaaataagatga 1676403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 1683065 - 1682931
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1683065 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1682966  T
Q  144 gtacttttctttgaatttaaagacaaataggatga 178  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1682965 gtacttttctttacatttgaagacaaataagatga 1682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 1696809 - 1696675
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||| |||||||||||   |||||||||||| |||||||| ||  | ||||    
T  1696809 attctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttgtgatgataaagcatcatatgacatttttggcta--tattta 1696712  T
Q  144 gtacttttctttgaatttaaagacaaataggatgaga 180  Q
    |||||||| |||  |||| |||||||||| |||||||    
T  1696711 gtacttttatttacatttgaagacaaataagatgaga 1696675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 15192137 - 15192212
Alignment:
Q  105 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 180  Q
    ||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||| |||||||||| |||||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 34850752 - 34850839
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 131  Q
    |||||||||||||| |||||||||||||| | ||||| ||| |||||| ||||| |||| |||||| || |||||||| |||||||||    
T  34850752 attctaacttcttgttattgtgtttcttgcgaacaagcaacagtttaaatttggagttgcgatgacagaacatcatataatatttttg 34850839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 34864458 - 34864383
Alignment:
Q  119 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| | | |||||| ||||||    
T  34864458 tatgatattttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgt 34864383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 12111510 - 12111446
Alignment:
Q  106 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 170  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||| |||| |||| ||||||||    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa 12111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 18897921 - 18897992
Alignment:
Q  101 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||||| |||| |||||||||| |||||||| | |||||||| |||||||||||| |||| ||||||||||    
T  18897921 tgtgatggcggatcatcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaata 18897992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 5906905 - 5906819
Alignment:
Q  102 gtgatgacggagcatcatatgatat-ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||||| | ||||||||||||| |||| | |||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||    
T  5906905 gtgatgacgaaacatcatatgatatatttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagag 5906819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 10576371 - 10576437
Alignment:
Q  89 taagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 155  Q
    |||||||||||||||||||| |||| ||||||||||||||| |  ||||||||||||  ||||||||    
T  10576371 taagtttggggttgtgatgatggagtatcatatgatattttagactatgtttttagttattttcttt 10576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 47023552 - 47023622
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacag 265  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||||| ||||| || ||||| ||||||||||    
T  47023552 tgatgaacgaaattggcaagtacatcaaatcgtaacaagtaataaggtagtaagtttatctttcttcacag 47023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 20718004 - 20717941
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgtt 257  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||| || ||||||||    
T  20718004 ttgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtt 20717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 9288142 - 9288204
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaag 165  Q
    |||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| || |||||    
T  9288142 tgatgaaggagcaccatatgatattttaggatatgtttttagtagttttctttgcatataaag 9288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 12840697 - 12840761
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttc 258  Q
    ||||||||||||||| |||||| ||   |||||||||||||| ||||||||| || |||||||||    
T  12840697 ttgatggacgaaattggcaagtgcactgaatcgtaacaagtattaaagtagtaagtttatcgttc 12840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 22220009 - 22219945
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||||||||  ||||| ||  ||||| ||||||||||||||||||| || ||||||||||    
T  22220009 tgatggacgaaattgacaagtgcactaaatcataacaagtaataaagtagtaagtttatcgttct 22219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 25315414 - 25315323
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgttttt-agtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| ||||||||||||| ||||| | |||||||||| |||||||||||||  |||| |||| ||||| |||||||  ||||| ||||||    
T  25315414 tgatgaccgagcatcatatgacattttag-ttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgt 25315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 24580047 - 24580004
Alignment:
Q  221 aaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    ||||||||||||||||||||||||| || |||||||||| ||||    
T  24580047 aaatcgtaacaagtaataaagtagttagtttatcgttctccaca 24580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 25050227 - 25050164
Alignment:
Q  124 tatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||||| ||||||||||||| |||| |||| |||| |||||||||| ||||| | ||||||    
T  25050227 tatttttggctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagag 25050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 30797754 - 30797703
Alignment:
Q  205 aattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 256  Q
    |||| |||||| ||| ||||||||||||||||||||||||| || |||||||    
T  30797754 aattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgt 30797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 10320394 - 10320350
Alignment:
Q  111 gagcatcatatgatatttttggttatgtttttagtacttttcttt 155  Q
    ||||||||||||| |||||| | ||||||||||||| ||||||||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaattttcttt 10320350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 17339995 - 17339927
Alignment:
Q  104 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||| |||||||||||||||||||| || |||||||||| |  |||| |||  |||||||| ||||||    
T  17339995 gatgatggagcatcatatgatattttaggctatgtttttaattattttatttacatttaaaggcaaata 17339927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 19826667 - 19826707
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  19826667 cttgaggacaaggaatggttcaagtttggggttgtgatgac 19826707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 21017750 - 21017899
Alignment:
Q  45 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgata-tttttggttatgttttta 143  Q
    ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||| ||||||||| || ||||||||||||||| ||||| ||||||||||||    
T  21017750 ttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgtgataacagagcatcatatgatatttttttgttatgttttta 21017849  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 193  Q
    ||| ||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  21017850 gtatttttctttgcatttgaagaaaaataagatgagagttagaggagttg 21017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 13911138 - 13911263
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  13911138 attctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgtgatgacggagaatcaaatgatatttttttctatgttttta 13911237  T
Q  144 gtacttttctttgaatttaaagacaa 169  Q
    ||| ||||||||| |||| |||||||    
T  13911238 gtaattttctttgtatttgaagacaa 13911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 25919647 - 25919564
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 186  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttaga 25919564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 8402792 - 8402693
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||| |||| ||| ||| |||| |||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||    
T  8402792 attctatcttcctgcaattttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgatattttagactatgttttta 8402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 17637035 - 17637126
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||||||||||| |||||||| ||||||| || |||||||||||| | ||||||||||||| ||| ||||| |||| ||||||    
T  17637035 tgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgt 17637126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 5632732 - 5632668
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 108  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||    
T  5632732 attctaacttcttgccattttgttgcttggggacaagcaacggtttaagtttggggttgtgatga 5632668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 11521039 - 11521090
Alignment:
Q  70 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatat 121  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  11521039 ttgaggacaagcaacggtttaagtttggcgttgtgatgacagagcatcatat 11521090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 33914714 - 33914654
Alignment:
Q  134 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| || ||||||    
T  33914714 tatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgt 33914654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 12573231 - 12573305
Alignment:
Q  112 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 186  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  12573231 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 12573305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 13549695 - 13549769
Alignment:
Q  112 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 186  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  13549695 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 13549769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 16970177 - 16970241
Alignment:
Q  107 gacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||||||| |||||||||||||||  |||||||||||| |||||||||| |||| || |||||||    
T  16970177 gacggagca-catatgatatttttgactatgtttttagtgcttttctttgtatttgaacacaaata 16970241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 19219394 - 19219317
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 180  Q
    |||||||| |||||||||||||| |||| | | ||||||||||| |||||||||  ||| |||| ||||| |||||||    
T  19219394 tgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgaga 19219317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 10343064 - 10343000
Alignment:
Q  200 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    |||||||||||||||| ||  |||||||||| ||||||||| |||| || |||||||||| ||||    
T  10343064 gacgaaattagcaagtgcacaaaatcgtaacgagtaataaaatagtaagtttatcgttctccaca 10343000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 10883984 - 10884024
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  10883984 cttgaggacaaggaacggttcaagtttggggttgtgatgac 10884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 18065761 - 18065828
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 170  Q
    ||||||||| |||| || ||| |||||||| ||||||||| ||| | ||||||| |||||||||||||    
T  18065761 tgatgacggggcattatgtgacatttttggctatgtttttggtaatattctttgcatttaaagacaaa 18065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 1475463 - 1475374
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagtt 192  Q
    |||||||  |||||||||||| ||||| || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||| ||||    
T  1475463 tgatgacatagcatcatatgacatttt-ggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagtt 1475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 31477771 - 31477705
Alignment:
Q  106 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||| |||||||  |||||| || || ||||||||||||  ||||||||| |||||||||||||||    
T  31477771 tgacgaagcatcacttgatatattaggatatgtttttagttattttctttgtatttaaagacaaata 31477705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 33913400 - 33913461
Alignment:
Q  198 tggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||||| |||||| ||  |||| |||||||||||||||||||| |  ||||||||||    
T  33913400 tggacgaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgttct 33913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 16223612 - 16223572
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  16223612 cttgaggacaagcaacaatttaagtttggggttgtgatgac 16223572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 18541774 - 18541814
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  18541774 cttgaggacaaggaatggttcaagtttggggttgtgatgac 18541814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 31283869 - 31283909
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  31283869 cttgaggacaagcaatagtttaagtttggggttgtgatgac 31283909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 47053927 - 47053967
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  47053927 cttgaggacaaggaatggttcaagtttggggttgtgatgac 47053967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 7494584 - 7494720
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||  |||||||| ||||||||||||| |||  |||||    
T  7494584 attctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatgaatgagcatcacatgatatttttggctattctttta 7494683  T
Q  144 gtacttttctttgaatttaaagacaaataggatgaga 180  Q
    ||||||||||||| | || |||||||| ||| |||||    
T  7494684 gtacttttctttgcacttgaagacaaacaggttgaga 7494720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 20471049 - 20470902
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaag-aaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 146  Q
    |||||||||||||| ||||| |||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||||    
T  20471049 taacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgtgatgacgaagcatcatatgaattttttggctttgtttttagta 20470950  T
Q  147 cttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||| |||  || | |||||||||| ||||| |||||||| ||||||    
T  20470949 cttttatttatatgtgaagacaaataagatgataattagaggagttgt 20470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 21471674 - 21471813
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    |||||||| |||||||| || |||||||||||  ||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  21471674 taacttctagctattgtattgcttgaggacaatcaacagtttaagtttggggttgtgatgacagagcatcatatgcca-ttttggttatgtttttagtac 21471772  T
Q  148 -ttttctttgaatttaaagacaaataggatgagaattagag 187  Q
     ||||| ||| |||| |||||||||| ||||| | ||||||    
T  21471773 tttttccttgcatttgaagacaaataagatgatatttagag 21471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 29544451 - 29544542
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||| ||||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  29544451 tgatgaaggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgt 29544542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 9761646 - 9761537
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||| ||||||||| |  |||||||||||| |||  ||||| ||||||||||||||||| ||||||||||||| | |||||| || |||||||    
T  9761646 attctaacttcatgctattgtctagcttgaggacaagcaacaatttaa-tttggggttgtgatgacagagcatcatatgaca-ttttggctacgttttta 9761549  T
Q  144 gtacttttcttt 155  Q
    ||||||||||||    
T  9761548 gtacttttcttt 9761537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 3269220 - 3269123
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 145  Q
    |||||||||| |||| |||| |  |||||||| |||||||||||||||| |||||||||||| |||| |||||||||| ||| || ||||||||||||    
T  3269220 taacttcttgttattttgttgcgagaggacaataaacggtttaagtttgaggttgtgatgaccgagcttcatatgatactttaggctatgtttttagt 3269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 2632619 - 2632523
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgttgatg 199  Q
    ||||||| ||| ||| ||||||||||||| |||||||| |||||||||| ||||| |||||||||| ||||| |||||| |||||| |||||||||||    
T  2632619 tgatgacagagtatcgtatgatatttttg-ttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatg 2632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 7142030 - 7142099
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||||| ||||||||||||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaata 7142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 9802057 - 9801996
Alignment:
Q  93 tttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 155  Q
    ||||||||||||||||| ||||||||||||| | |||||| || |||||||||||||||||||    
T  9802057 tttggggttgtgatgacagagcatcatatgaca-ttttggctacgtttttagtacttttcttt 9801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 21544679 - 21544749
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 264  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||||||||| || ||| |||||| ||||    
T  21544679 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttaccgttctccaca 21544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 2353421 - 2353357
Alignment:
Q  105 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaa 169  Q
    ||||||||||||| ||||||||||| || ||||||||||||  ||||||||| |||| |||||||    
T  2353421 atgacggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 20446171 - 20446262
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| ||||| ||||||||||||| | | ||||||||| ||||||| ||||| |||| ||||||| || |||||||||||||| ||||||    
T  20446171 tgatgacagagcaacatatgatattttagct-atgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgt 20446262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 23124833 - 23124924
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgtt 195  Q
    |||||| |||||||||| ||| ||||||   |||||||||||||| |||||||  |||| |||||||||| ||||||| |||||| |||||||    
T  23124833 tgatgatggagcatcatctgacattttttactatgtttttagtac-tttctttacatttgaagacaaataagatgagatttagaggagttgtt 23124924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 7494555 - 7494484
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||| |||| || ||||| |||| ||||||    
T  7494555 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagg 7494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 16536811 - 16536689
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16536811 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16536713  T
Q  148 ttttctttgaatttaaagacaaat 171  Q
    ||||||||| |||| |||||||||    
T  16536712 ttttctttgcatttgaagacaaat 16536689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 16577513 - 16577387
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16577513 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16577414  T
Q  144 gtacttttctttgaatttaaagacaaat 171  Q
     || ||||||||| |||| |||||||||    
T  16577413 cta-ttttctttgcatttgaagacaaat 16577387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 16588149 - 16588275
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16588149 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16588248  T
Q  144 gtacttttctttgaatttaaagacaaat 171  Q
     || ||||||||| |||| |||||||||    
T  16588249 cta-ttttctttgcatttgaagacaaat 16588275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 16628851 - 16628973
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16628851 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16628949  T
Q  148 ttttctttgaatttaaagacaaat 171  Q
    ||||||||| |||| |||||||||    
T  16628950 ttttctttgcatttgaagacaaat 16628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 1074341 - 1074422
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatat 126  Q
    |||||| |||||||||||| ||||  ||| ||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||    
T  1074341 attctaccttcttgctattttgttgtttggggacaagcaacgatttaagtttagggttgtgatgatgtagcat-atatgatat 1074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 7956058 - 7956119
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtga 105  Q
    |||||| | ||||| |||| |||| ||| ||||||||||||| |||||||||||||||||||    
T  7956058 attctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggttgtga 7956119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 18496498 - 18496555
Alignment:
Q  104 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 161  Q
    ||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| ||||    
T  18496498 gatgatggagcaccatatgatattttaggctatgtttttagtagttttctttgcattt 18496555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 21545984 - 21545929
Alignment:
Q  103 tgatgacggagcat---catatgatatttttggttatgtttttagtacttttcttt 155  Q
    ||||||||||||||   |||||||||||||||  ||||||||||||||||||||||    
T  21545984 tgatgacggagcatgatcatatgatatttttgactatgtttttagtacttttcttt 21545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 7143639 - 7143571
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttca 262  Q
    |||||||| ||||||  ||||| ||  ||||||||||||||||||||||||  || |||||||||||||    
T  7143639 ttgatggatgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagcaagtttatcgttcttca 7143571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 7776350 - 7776422
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    |||||| || |||||||||||| ||  ||||| |||||||||| |||||||| || |||||||||| ||||||    
T  7776350 ttgatgaacaaaattagcaagtgcaccaaatcttaacaagtaacaaagtagtaagtttatcgttctccacagg 7776422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 13287676 - 13287716
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  13287676 cttgaggacaagaaacagtctaagtttggggttgtgatgac 13287716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 26137074 - 26137034
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  26137074 cttgaggacaaggaacggttcaagtttggggttgtgatgac 26137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 9071451 - 9071392
Alignment:
Q  200 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||| || || |||||||    
T  9071451 gacgaaattagcaactgcatcaaatcgtaacaagtaaaaaagtagtaagtttttcgttct 9071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 18494555 - 18494626
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    |||| ||||||||| |||||| ||  ||||||||||||||||||| ||||| || |||| ||||| ||||||    
T  18494555 tgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg 18494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 21473094 - 21473039
Alignment:
Q  190 gttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 245  Q
    |||||||||||||||||||| ||||| ||  ||||| |||||||| ||||||||||    
T  21473094 gttgttgatggacgaaattatcaagtgcaccaaatcataacaagttataaagtagt 21473039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 7815267 - 7815332
Alignment:
Q  115 atcatatgatatttttggttatgtttttagtacttttct-ttgaatttaaagacaaataggatgaga 180  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||| |||| ||||| |||||||    
T  7815267 atcatatgatatttt-ggttatgtttttagtacttttttgttgcatttgaagataaataagatgaga 7815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 22532830 - 22532784
Alignment:
Q  99 gttgtgatgacggagcatcatatgatatttttggttatgtttttagt 145  Q
    ||||| |||| |||||||||||||||||||| || ||||||||||||    
T  22532830 gttgtaatgatggagcatcatatgatattttaggctatgtttttagt 22532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 7152157 - 7152116
Alignment:
Q  221 aaatcgtaacaagtaataaagtagtcagattatcgttcttca 262  Q
    ||||||||||||||||||||||||| || |||||||| ||||    
T  7152157 aaatcgtaacaagtaataaagtagtaagtttatcgtttttca 7152116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 14074547 - 14074486
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 256  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14074547 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 14384575 - 14384514
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 256  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14384575 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14384514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 2506786 - 2506826
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  2506786 cttgaggacaagcaactatttaagtttggggttgtgatgac 2506826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 4596958 - 4596918
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  4596958 cttgaggacaaggaatggttcaagtttggggttgtgatgac 4596918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 15170730 - 15170770
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  15170730 cttgaggacaagcaacagtttatgtttggggttgtgatgac 15170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 19154949 - 19154909
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  19154949 cttgaggacaagcaacagattaagtttggggttgtgatgac 19154909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 20754348 - 20754308
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  20754348 cttgaggacaagcaacagattaagtttggggttgtgatgac 20754308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 39270239 - 39270279
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  39270239 cttgaggacaagcaacaatttaagtttggggttgtgatgac 39270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 24120107 - 24120254
Alignment:
Q  47 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 146  Q
    ||||||| |||||||||||||  ||||||||||| |||  ||||  || ||||||||||||||| | ||||||||||||||||| | |||||||||||||    
T  24120107 ctaacttattgctattgtgttgattgaggacaagcaacattttattttgggggttgtgatgacgaatcatcatatgatattttttgctatgtttttagta 24120206  T
Q  147 cttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  24120207 cttttctttgcatttgaagagaaataagatgagagttagaggagttgt 24120254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 16052519 - 16052369
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||||||||||||||||||| | |   |||||||   |  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  16052519 attctaacttcttgctattgtgctgcaaaaggacaaacgagagtttaagtttagggttgtgatgacggagcatcatatgatatttttggctatgttttta 16052420  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||| |||| |||| | ||||||||  |||||| |||||| ||||||    
T  16052419 gtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgt 16052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 22894768 - 22894648
Alignment:
Q  52 ttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtactttt 151  Q
    |||||||||||||||||||||||||||||  || ||||||||||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||||||    
T  22894768 ttcttgctattgtgtttcttgaggacaagggacagtttaagtttgagattgtgatgacagagcatcatatgacatttttaggtatgtttttagtactttt 22894669  T
Q  152 ctttgaatttaaagacaaata 172  Q
    ||| | |||| ||| ||||||    
T  22894668 cttcgcatttgaagccaaata 22894648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 28252571 - 28252481
Alignment:
Q  96 ggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 186  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||| |||||    
T  28252571 ggggttgtgatgaaggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttaga 28252481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 28901582 - 28901432
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||   ||||||||   |||||||||||||| |||||||| |||| |||||    
T  28901582 attctaacttcttgctactgtgttgcttgagaacaagcaacgatttaagtttctagttgtgatattggagcatcatatgaaatttttggctatgctttta 28901483  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
     |||||||||||| |||| || ||||||| | |||||  ||||| ||||||    
T  28901482 atacttttctttgcatttgaatacaaataagttgagagatagaggagttgt 28901432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 10866861 - 10867011
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 143  Q
    |||||| ||| |||||||| |||  |||||||||||  || ||||||| |||||||||||||||| ||| ||||||||||||||||| | |||| |||||    
T  10866861 attctatctttttgctattttgtagcttgaggacaaacaaaggtttaattttggggttgtgatgatggaacatcatatgatattttttggtatgatttta 10866960  T
Q  144 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||  |||||||||||||  ||| |||||| || |  | |||||||||||||    
T  10866961 gttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgt 10867011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 13082137 - 13082029
Alignment:
Q  86 gtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaatta 184  Q
    ||||||||||||||||||||||||  | |||||||||| | ||||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||| |||    
T  13082137 gtttaagtttggggttgtgatgacaaaacatcatatgaca-ttttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagtta 13082039  T
Q  185 gagtagttgt 194  Q
    ||| ||||||    
T  13082038 gaggagttgt 13082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 5570386 - 5570305
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 129  Q
    |||||||||  |||||||||  ||||| ||||| |||  |||||||||||||||||||| ||||||||||||||||||||||    
T  5570386 taacttcttattattgtgttgtttgagtacaagcaacaatttaagtttggggttgtgataacggagcatcatatgatatttt 5570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 12956431 - 12956512
Alignment:
Q  113 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgt 12956512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 14977280 - 14977199
Alignment:
Q  113 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||||||||||||||   ||||||||||| ||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgt 14977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 28973573 - 28973490
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 131  Q
    |||||||||| |||||||||||||   |||||| ||| |||||||||||||||||  |||||  | ||||||||||||||||||    
T  28973573 taacttcttgttattgtgtttcttaccgacaagcaactgtttaagtttggggttgcaatgacaaaacatcatatgatatttttg 28973490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 11310379 - 11310318
Alignment:
Q  111 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| |||| |||| |||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaata 11310318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 16054225 - 16054317
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||||| ||||||||| |||| |||||||||| ||| ||| |||||| ||||||    
T  16054225 gtgatgacagagcatcatatgaca-ttttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgt 16054317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 29291670 - 29291755
Alignment:
Q  70 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 155  Q
    ||||||| ||| |||| |||||||||| |||| |||| ||||| |||||||||||||||| || ||||||||| ||  ||||||||    
T  29291670 ttgaggataagcaacgatttaagtttgaggttatgattacggaacatcatatgatattttaggctatgttttttgttattttcttt 29291755  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 32239219 - 32239310
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    |||||| || ||||| |||||||||||||| ||||||||||| ||||||||||  |||| |||| | ||| ||| | |||||||| ||||||    
T  32239219 tgatgatggtgcatcgtatgatatttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgt 32239310  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 6358629 - 6358727
Alignment:
Q  102 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatgg 200  Q
    |||||||| |||||  |||||| ||||| || |||||||||||||||||| |||| |||| |||||| ||| | |||||  ||||| ||||||| ||||    
T  6358629 gtgatgacagagcactatatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatgg 6358727  T

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Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 12957621 - 12957559
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 256  Q
    |||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||    
T  12957621 ttgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcgt 12957559  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 32240511 - 32240446
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||| ||||| |||||| ||  |||| |||||||||||||||||||| || ||||||||||    
T  32240511 ttgatggacaaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaagtttatcgttct 32240446  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 29047499 - 29047408
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 194  Q
    ||||||| |||||||||||||||  ||||| ||| || ||||||| ||||||||| |||| || ||||||| ||||||| |||||| ||||||    
T  29047499 tgatgacagagcatcatatgata-atttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgt 29047408  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 13305721 - 13305658
Alignment:
Q  196 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 259  Q
    ||||||||||||| |||||| |   |||| |||||||||||||||||||| || ||||||||||    
T  13305721 gatggacgaaattggcaagtgcgcaaaattgtaacaagtaataaagtagttagtttatcgttct 13305658  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 13803096 - 13803147
Alignment:
Q  194 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 245  Q
    |||||||||||||||  ||||| ||| |||||||||||||||||||| ||||    
T  13803096 ttgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaaatagt 13803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 30851284 - 30851230
Alignment:
Q  101 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 155  Q
    |||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||    
T  30851284 tgtgatgatggaacgtcatatgatatttttggctatgtttttagttattttcttt 30851230  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 26829427 - 26829472
Alignment:
Q  64 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  26829427 tgttacttgaggacaagaaacagtctaagtttggggttgtaatgac 26829472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 26853646 - 26853601
Alignment:
Q  221 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 266  Q
    ||||||||||||||||||||||||| || | |||||||| ||||||    
T  26853646 aaatcgtaacaagtaataaagtagtaagttcatcgttctccacagg 26853601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 25180687 - 25180727
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  25180687 cttgaggataagaaactatttaagtttggggttgtgatgac 25180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 29765357 - 29765397
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  29765357 cttgaggacaagcaacaatttaagtttggggttgtgatgac 29765397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 30543711 - 30543763
Alignment:
Q  119 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 171  Q
    |||||||||||| | ||||||||||||| |||| |||| |||| |||||||||    
T  30543711 tatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 33878272 - 33878232
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  33878272 cttgaggacaaggaatggttcaagtttggggttgtgatgac 33878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 22783 - 22661
Alignment:
Q  48 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 147  Q
    |||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||||||||  || ||||||||   |||||||| ||||||||| ||||    
T  22783 taacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatagaccatcatataccatttttggctatgttttttgtac 22684  T
Q  148 ttttctttgaatttaaagacaaa 170  Q
    |||| |||| |||| ||||||||    
T  22683 ttttatttgcatttgaagacaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 2071 - 1952
Alignment:
Q  46 tctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 145  Q
    ||||||||||||||||| | || ||||| |||||| |||| |||||||||||||||| ||||| |||  || ||||||| |||||   ||||||||||||    
T  2071 tctaacttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttgcgatgatggaatataatatgatgtttttaactatgtttttagt 1972  T
Q  146 acttttctttgaatttaaag 165  Q
      ||||||||| ||||||||    
T  1971 tattttctttgcatttaaag 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 6128 - 6205
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 180  Q
    |||||||  |||||||||||  |||||||| ||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgaga 6205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 7421 - 7349
Alignment:
Q  195 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacaggt 267  Q
    ||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||||| |||||||    
T  7421 tgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacaggt 7349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 21336 - 21398
Alignment:
Q  110 ggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||| |||| |||| |||||    
T  21336 ggagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaata 21398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 8892 - 8816
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgag 179  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||| |||  |||| |||| ||||| ||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgag 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 13239 - 13170
Alignment:
Q  118 atatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 187  Q
    ||||||||||||| |||||||||||||||||||| |||  || | |||||||||| ||||||| ||||||    
T  13239 atatgatatttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagag 13170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 446937 - 447014
Alignment:
Q  103 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgaga 180  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||| ||||  |||| |||||||||| |||||||    
T  446937 tgatgacagagcatcatatgatattttt-gctatgtttttagtacttttcctttacatttgaagacaaataagatgaga 447014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 27128 - 27068
Alignment:
Q  112 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 172  Q
    ||||||| |||||||||| || ||||||||||||||||||||||| |||| |||| |||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcatttgaagataaata 27068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 24001 - 24041
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  24001 cttgaggacaaggaatggtttaagtttggggttgtgatgac 24041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 28239 - 28279
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  28239 cttgaggacaaggaacggttcaagtttggggttgtgatgac 28279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 25278 - 25216
Alignment:
Q  44 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgat 106  Q
    |||||||||| || ||||| |||| |||||||||||| |||   |||||||||||||||||||    
T  25278 attctaacttttttctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 28544 - 28585
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgacg 110  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  28544 cttgaggacaaggaatggttcaagtttggggttgtgatgacg 28585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 3881 - 3841
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  3881 cttgaggacaaggaatggttcaagtttggggttgtgatgac 3841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 1094 - 1054
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1094 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 3979 - 4023
Alignment:
Q  64 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 108  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||    
T  3979 tgttccttgaggactagaaagggttcaagtttggggttgtgatga 4023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 38422 - 38382
Alignment:
Q  69 cttgaggacaagaaacggtttaagtttggggttgtgatgac 109  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  38422 cttgaggacaagcaacaatttaagtttggggttgtgatgac 38382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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