View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_57 (Length: 279)

Name: NF0063_2D_low_57
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_57
NF0063_2D_low_57
[»] chr4 (13 HSPs)
chr4 (72-279)||(31151086-31151292)
chr4 (92-270)||(31488783-31488961)
chr4 (92-270)||(31030472-31030650)
chr4 (92-270)||(31020591-31020769)
chr4 (98-257)||(31160006-31160165)
chr4 (98-263)||(31529259-31529424)
chr4 (86-279)||(31496132-31496325)
chr4 (97-279)||(31476203-31476385)
chr4 (98-279)||(31023490-31023670)
chr4 (92-275)||(31501308-31501491)
chr4 (170-279)||(31162363-31162471)
chr4 (9-48)||(31151316-31151355)
chr4 (98-219)||(31244241-31244362)
[»] chr6 (10 HSPs)
chr6 (96-265)||(12785664-12785833)
chr6 (103-270)||(12782220-12782387)
chr6 (96-265)||(12781474-12781643)
chr6 (95-275)||(33307201-33307381)
chr6 (84-270)||(33412638-33412824)
chr6 (84-275)||(33265597-33265788)
chr6 (84-275)||(33274741-33274932)
chr6 (78-124)||(9169557-9169603)
chr6 (215-257)||(33288308-33288350)
chr6 (84-192)||(33403409-33403517)
[»] scaffold1749 (1 HSPs)
scaffold1749 (83-275)||(861-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (83-275)||(9622-9814)
[»] chr2 (1 HSPs)
chr2 (91-275)||(17437870-17438054)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 279
Target Start/End: Complemental strand, 31151292 - 31151086
Alignment:
Q  72 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151292 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 31151193  T
Q  172 aagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattttt 271  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151192 aagaaaat-cattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattttt 31151094  T
Q  272 gttgtggt 279  Q
    ||||||||    
T  31151093 gttgtggt 31151086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 270
Target Start/End: Original strand, 31488783 - 31488961
Alignment:
Q  92 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 191  Q
    |||||||||||||||||||||| ||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| | |    
T  31488783 aattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgt 31488882  T
Q  192 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttt 270  Q
    | || ||||| ||||||||  | ||||||||||| |||||||| || ||| |||| ||||||||||  |||||| ||||    
T  31488883 ttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggtttt 31488961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 31030650 - 31030472
Alignment:
Q  92 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 191  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31030650 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31030551  T
Q  192 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttt 270  Q
    | || || || ||||| ||  | ||||||||||||||| |||| || ||| |||| ||||||||||  |||||| ||||    
T  31030550 ttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt 31030472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 31020769 - 31020591
Alignment:
Q  92 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 191  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31020769 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31020670  T
Q  192 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttt 270  Q
    | || || ||  |||| ||  | ||||||||||||||| |||| || ||| |||| ||||||||||  |||||| ||||    
T  31020669 ttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt 31020591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 31160165 - 31160006
Alignment:
Q  98 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 197  Q
    |||||||| ||||| |||||||||||  |||| |||| |  ||| ||  | |||||||||||||||||||| ||||||||| ||||  || |||||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  198 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaag 257  Q
    ||||| |||| |||||||||||||||||||||||||| || |||||||  ||||||||||    
T  31160065 atgattctaacctgaagaaaggtgaatccatagcacccgagctccttcatgcaattgaag 31160006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 31529424 - 31529259
Alignment:
Q  98 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 197  Q
    |||||||||||| ||||||| |||||   ||| |||||  ||||||||||||||||||||||| | ||||| |||| || | ||||| || |||| || |    
T  31529424 tatgacgtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagag 31529325  T
Q  198 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctc 263  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||| || || |||| |||||    
T  31529324 atgacactaagcttaagaaaggtgaatctatagcacctgaactccttcgtgctatcgaagcctctc 31529259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 31496132 - 31496325
Alignment:
Q  86 aggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattt 185  Q
    ||||| ||| |||||||||||||||||| |||||||||| | || || |||  ||| ||||||||||||||||||| | || | || ||| || ||||||    
T  31496132 aggagcaatcattatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcattt 31496231  T
Q  186 tttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggt 279  Q
     | |||| || ||||| ||||| ||    |||||||||||||||| |||| | |||||| | ||||||||| |||||||| |||||||||||||    
T  31496232 ctgcatttagagatgacactaatcttccaaaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggt 31496325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 31476203 - 31476385
Alignment:
Q  97 ttatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagg 196  Q
    ||||||||||||||| ||||| |||||| ||||||| |||  ||| |||||||||   ||||||| ||||||  ||  |||| |  ||||| |||| |||    
T  31476203 ttatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagg 31476302  T
Q  197 gatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggt 279  Q
    ||||| ||||| ||  | ||||||||||||||||||||||||||| |||  ||||||||||  |||||| |||| ||||||||    
T  31476303 gatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggt 31476385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 31023670 - 31023490
Alignment:
Q  98 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 197  Q
    |||||||||||||| ||||| | ||||||||| || |||  |||||||| |||||||||||||||| || | | ||||||| | ||  || |||||| ||    
T  31023670 tatgacgtgtttgtgagcttcaaaggtaaagacactcgctacaacttcattgatcatctttttgcttccttccgaagaaaaggtatcattgcattcaagg 31023571  T
Q  198 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggt 279  Q
    | ||| | | ||| ||||||||||||||||| |||||  | |||| ||  |||||||||| |||||| |||||| |||||||    
T  31023570 acgatgcaatgctcaagaaaggtgaatccattgcaccatagctccctcatgcaattgaagcctctca-atttttattgtggt 31023490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 31501308 - 31501491
Alignment:
Q  92 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 191  Q
    ||||||||||| | ||||||||  ||||||||| |||| || |||  ||| |||||| |||||||||||| |||| |  | ||| || ||||| || |||    
T  31501308 aattattatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttgatgccttcaacagagaaggcattcttgcat 31501407  T
Q  192 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    | |||||||| ||||| ||    |||||||||||||||||| | || || ||||| ||||||||||| ||| | ||||||||||    
T  31501408 ttagggatgacactaatcttccaaaaggtgaatccatagcatccgagcttcttcgtgcaattgaagattcttatatttttgttg 31501491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 31162471 - 31162363
Alignment:
Q  170 caaagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattt 269  Q
    ||||||||| | |||||| |||| ||||||||| ||||||| || |||||||||||||| | | | || |||||| ||||||| | |||||||| |||||    
T  31162471 caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcg-agactctctgattt 31162373  T
Q  270 ttgttgtggt 279  Q
    |  |||||||    
T  31162372 tcattgtggt 31162363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 31151355 - 31151316
Alignment:
Q  9 agatggacatcaccagcagtaataatagtatcatcaaaat 48  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  31151355 agatggccagcaccagcagtaataatagtatcatcaaaat 31151316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 31244241 - 31244362
Alignment:
Q  98 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 197  Q
    ||||| |||||||| ||||||||||||   || ||||||  ||| ||||||||||| |||||||   | || || | |||| ||||| || | |||||||    
T  31244241 tatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgatcacctttttggcactctccataaaaaaggcattgttaccttcaggg 31244340  T
Q  198 atgatactaagctgaagaaagg 219  Q
    ||||||| ||||| ||||||||    
T  31244341 atgatacaaagctcaagaaagg 31244362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 265
Target Start/End: Complemental strand, 12785833 - 12785664
Alignment:
Q  96 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 195  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||||||||||||||||| ||||||  | |||||  | |||||||    
T  12785833 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcag 12785734  T
Q  196 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcag 265  Q
     ||||| ||||| || || |||||||||| ||||||||| | |||| || |||||||||||| |||||||    
T  12785733 agatgacactaaacttaaaaaaggtgaattcatagcacccggactctttagagcaattgaagcctctcag 12785664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 270
Target Start/End: Complemental strand, 12782387 - 12782220
Alignment:
Q  103 cgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagggatgat 202  Q
    ||||||||| ||||| ||||| | ||| |||||  |||| ||||||||||||||||||| |||||| ||||||||| | |||||| ||||||| |||||     
T  12782387 cgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgac 12782288  T
Q  203 actaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttt 270  Q
    ||||| ||  | |||||| | ||||||||| | || ||| ||| ||||||||||| ||||||| ||||    
T  12782287 actaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggtttt 12782220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 265
Target Start/End: Complemental strand, 12781643 - 12781474
Alignment:
Q  96 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 195  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||| ||| ||||||||| ||||||  | |||||  | |||||||    
T  12781643 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcag 12781544  T
Q  196 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcag 265  Q
     ||||| ||||| || || ||||| |||| ||||||||| | |||| || |||||||||||| |||||||    
T  12781543 agatgacactaaacttaaaaaaggcgaattcatagcacccggactctttagagcaattgaagcctctcag 12781474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 275
Target Start/End: Complemental strand, 33307381 - 33307201
Alignment:
Q  95 tattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattca 194  Q
    |||||||| |||||||||| ||| |||||| |||| || |||  |||||| ||||||  |||||||| ||||||  ||| |||| |||||||| ||||      
T  33307381 tattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttc 33307282  T
Q  195 gggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    ||||||| ||||| ||  | || |||||||| |||| |||||| |||||||||||||| ||||  |||| | |||||||||    
T  33307281 gggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaatcgaaggatctcgggtttttgttg 33307201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 33412824 - 33412638
Alignment:
Q  84 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 183  Q
    |||| |||||||||||||| |||||||||| ||| |||||| |||| || |||  ||| ||||||||| ||||||||| ||| ||  |||  ||| | ||    
T  33412824 caagaagaaattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtat 33412725  T
Q  184 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttt 270  Q
    || | |||| |||||||| || || || || |||||||||  ||||| |||||| |||||||| ||||| ||||  |||||| ||||    
T  33412724 ttatgcatttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaatcgaaggatctcaggtttt 33412638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 33265788 - 33265597
Alignment:
Q  84 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 183  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33265788 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33265689  T
Q  184 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || |||||||||||||| ||||  |||||  |||||||||    
T  33265688 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttg 33265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 33274932 - 33274741
Alignment:
Q  84 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 183  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33274932 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33274833  T
Q  184 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || |||||||||||||| ||||  |||||  |||||||||    
T  33274832 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttg 33274741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 9169603 - 9169557
Alignment:
Q  78 catctccaaggagaaattattatgacgtgtttgtcagctttagaggt 124  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  9169603 catctccaaggagaaatcattatgatgtgtttttcacctttagaggt 9169557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 33288350 - 33288308
Alignment:
Q  215 aaaggtgaatccatagcacctgaactccttcgagcaattgaag 257  Q
    |||||||||||||||| |||||| |||||||||||||| ||||    
T  33288350 aaaggtgaatccataggacctgagctccttcgagcaatcgaag 33288308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 33403517 - 33403409
Alignment:
Q  84 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 183  Q
    |||| ||||||||||| || |||||| ||| |||||||||| |||| || ||   ||| |||||||||  |||||||| ||||||  ||| |||| ||||    
T  33403517 caagaagaaattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcat 33403418  T
Q  184 tttttcatt 192  Q
    |||| ||||    
T  33403417 ttttgcatt 33403409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 275
Target Start/End: Complemental strand, 1053 - 861
Alignment:
Q  83 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 182  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  1053 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 954  T
Q  183 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| |||| ||||  |||||| |||| ||||    
T  953 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttg 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 275
Target Start/End: Complemental strand, 9814 - 9622
Alignment:
Q  83 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 182  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  9814 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 9715  T
Q  183 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| |||| ||||  |||||| |||| ||||    
T  9714 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttg 9622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 275
Target Start/End: Original strand, 17437870 - 17438054
Alignment:
Q  91 aaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttca 190  Q
    |||| ||||||| |||||||||| |||||||||| ||||||| |||  ||| |||||||||  ||||||||  |||||  ||||||||  ||||||| ||    
T  17437870 aaatcattatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgca 17437969  T
Q  191 ttcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 275  Q
    ||  | ||||| ||||| ||  | |||||||||||||||| | |||| || ||||||||||| ||||  |||||| |||||||||    
T  17437970 tttcgagatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttg 17438054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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