View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_6 (Length: 721)
Name: NF0063_2D_low_6
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_6
[» ] scaffold0026 (4 HSPs)
Alignment Details
Target: scaffold0026 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 21 - 704
Target Start/End: Original strand, 102062 - 102745
Alignment:
Q
21
tcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatg
120
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102062
tcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatg
102161
T
Q
121
gaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagt
220
Q
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102162
gaagagaacacaggcagttgtttcaccgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagt
102261
T
Q
221
ttttcaagaggtaagtcatcattattaactttttcaactcttggtttgtttcctgnnnnnnntttcatttaggcttgtattatatacactattatttaac
320
Q
||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
102262
ttttcaagaggtaagtcattagtattaactttttcaactcttggtttgtttcctgaaaaaaaattcatttaggcttgtattatatacactattatttaac
102361
T
Q
321
acaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttc
420
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102362
acaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttc
102461
T
Q
421
ctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaattac
520
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102462
ctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaattac
102561
T
Q
521
aattaattaggctctaagctatttgtgtctcttaaattgttttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat
620
Q
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102562
aattaattaggctctaagctatttgtgtctcttaaattgttatagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat
102661
T
Q
621
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact
704
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
102662
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact
102745
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 100312 - 100441
Alignment:
Q
348
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc
447
Q
|||| ||||||||| | |||||||||||||||||||| ||| | || |||||||||| |||||||||||| |||||||| || ||||||||||||||||
T
100312
tgacttgttagaatactggagattgctccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc
100411
T
Q
448
ctcatgccatgtctgtctttctcatggtaa
477
Q
| ||||| ||||||||||||||||||||||
T
100412
cacatgctatgtctgtctttctcatggtaa
100441
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 561 - 688
Target Start/End: Original strand, 100631 - 100758
Alignment:
Q
561
tttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctgg
660
Q
||||||||||||| ||||||||||||||| | |||||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| ||| ||||
T
100631
tttagacatgtgagtcagcagttcaactgcgcaaggctggaaaagtcacagtcagagaatcaaatttgaagaaattaggtgccactcatttcaaaactgg
100730
T
Q
661
tgtaaaagatgagcattttgaggtaata
688
Q
|||| ||||||| |||||||||||||||
T
100731
tgtacaagatgaacattttgaggtaata
100758
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 100087 - 100182
Alignment:
Q
140
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag
235
Q
||||||| || || ||||| ||||||||||| || |||||||||||||| ||||| || || | || |||||||||||||||||||||| |||||
T
100087
gtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaag
100182
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 94 - 515
Target Start/End: Complemental strand, 25848164 - 25847731
Alignment:
Q
94
tattattcttaatcagcagttaacatggaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaaga
193
Q
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25848164
tattattcttaatcagcagttaacatggaagagaacacaggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagt
25848065
T
Q
194
acaactcagaagatctgagtctcaagtttttcaagaggtaagtcatca----------ttattaactttttcaactcttggtttgtttcctgnnnnnnnt
283
Q
||||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||
T
25848064
acaactctggagatctgagtctcaagtttttcaagaagtaagtcattaatttcatttattattaactttttcaactcttggtttgttttatgatgaaaaa
25847965
T
Q
284
-----ttcatttaggcttgtattatatacactattatttaacacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccac
378
Q
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
T
25847964
aaaaattcatttaggcttgtaatatatacactattatttaactcaacattatttttgaa---ttgattatgacatgttagaatccttgagattgctccac
25847868
T
Q
379
cagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaac
478
Q
||||||||||| | ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
T
25847867
cagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagcctcatgccatgtctgtctttcttatggtaag
25847768
T
Q
479
cttgcttaacacttagcatccattaatttattgatta
515
Q
||| ||||||| ||| ||||||||||||||| ||||
T
25847767
cttacttaacagttattatccattaatttattaatta
25847731
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 563 - 702
Target Start/End: Complemental strand, 25847654 - 25847515
Alignment:
Q
563
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg
662
Q
|||||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||
T
25847654
tagacatgtgaatcagcagttcaactacgtaaggctggtaaagtcactgttagagaatcaaacttgaaaaagttaggtgccactcatttcaaaactggtg
25847555
T
Q
663
taaaagatgagcattttgaggtaatactaacatactacta
702
Q
||||||||||||||||||||||||||||||||||||||||
T
25847554
taaaagatgagcattttgaggtaatactaacatactacta
25847515
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 348 - 477
Target Start/End: Complemental strand, 25849875 - 25849746
Alignment:
Q
348
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc
447
Q
|||| ||||||||| | |||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
T
25849875
tgacttgttagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagcttaagc
25849776
T
Q
448
ctcatgccatgtctgtctttctcatggtaa
477
Q
||||||| |||||||| |||||||||||||
T
25849775
ctcatgctatgtctgtttttctcatggtaa
25849746
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 25845656 - 25845535
Alignment:
Q
356
tagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgcc
455
Q
|||||| ||||||||||||||| ||||| | |||| ||||||||||| | ||||||||| |||||||||||| |||| | ||||||||||| ||||||
T
25845656
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaacaccaagctcaagccacatgcc
25845557
T
Q
456
atgtctgtctttctcatggtaa
477
Q
||||||||||||||||||||||
T
25845556
atgtctgtctttctcatggtaa
25845535
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 563 - 686
Target Start/End: Complemental strand, 25849594 - 25849471
Alignment:
Q
563
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg
662
Q
||||||||||||||||||||||| ||| | |||||||| ||||| | || || |||||||| |||||||||||||||||||||||||| ||| ||||||
T
25849594
tagacatgtgaatcagcagttcagctgcgtaaggctggtaaagtcagagtgagagaatcaaatttgaagaagttaggtgccactcatttcaaaactggtg
25849495
T
Q
663
taaaagatgagcattttgaggtaa
686
Q
| ||||||| |||||||||||||
T
25849494
tgcaagatgaacattttgaggtaa
25849471
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 25845846 - 25845792
Alignment:
Q
140
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaa
194
Q
|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
T
25845846
gtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaa
25845792
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 685
Target Start/End: Complemental strand, 25845303 - 25845181
Alignment:
Q
563
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg
662
Q
|||||||||||||||||||||||| || | || | || ||||| || || || ||||||| |||||| || |||||||| | |||||||||| |||||
T
25845303
tagacatgtgaatcagcagttcaattgcgaaaatccggtaaagttacggtcagagaatcaagcttgaaaaaattaggtgctaaccattttaaatatggtg
25845204
T
Q
663
taaaagatgagcattttgaggta
685
Q
|| ||| |||||||||||||||
T
25845203
tagtagacgagcattttgaggta
25845181
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 25848211 - 25848164
Alignment:
Q
25
tatataccataaaacctgtaccatagcacaagctacaaaattaacaat
72
Q
|||||||||| ||| |||||||||||||||||||||||||| ||||||
T
25848211
tatataccatgaaaactgtaccatagcacaagctacaaaatcaacaat
25848164
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 25850105 - 25850011
Alignment:
Q
141
tttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag
235
Q
|||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||||| || |||||
T
25850105
tttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtgacctgagtctcaagtttttcacgaagtaag
25850011
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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