View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_60 (Length: 276)
Name: NF0063_2D_low_60
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_60
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 8064457 - 8064272
Alignment:
Q
72
ttttcatttttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggag
171
Q
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
T
8064457
ttttcatttttgtagtgggttatacataactggaatgatgatgattgtgtaaagatacttaaaaagtgtaaagaagctgcttcaaggcaaaagaaaggag
8064358
T
Q
172
gaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataaca
257
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
8064357
gaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataaca
8064272
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 8074503 - 8074328
Alignment:
Q
80
tttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggaggaaaagtg
179
Q
|||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||| |||| |||| ||||||||||
T
8074503
tttgtagtggattttgcataactggaatgatgatgactgtgtcaagatacttagaaattgtaaagaagctgtatcaaggaaaaacaaagaaggaaaagtg
8074404
T
Q
180
atcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagtcaaactctgctttgacataa
255
Q
||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||
T
8074403
atcataatagatattgtgataaatgaagagcaagatgagcatgaaatgacagaactcaaactcttctttgacataa
8074328
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 8064626 - 8064562
Alignment:
Q
9
aatccagattccagacacaacaaagtattattaatccatacattattaattagcttaatttcctt
73
Q
||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||
T
8064626
aatccagattccagacacaacaaagtattgttaagccatgcattattaattaacttaatttcctt
8064562
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 34949988 - 34949830
Alignment:
Q
77
atttttgtagtgggttttacataactggaatgatgatgattgtgtcaagatacttaaaaattgtaaagaaactgcttcaaggcaaaagaaaggaggaaaa
176
Q
||||||| ||||||||||||| || ||| |||||||||||| | |||||||| ||||| || || || || ||| | || ||||||||||||||
T
34949988
atttttgcagtgggttttacacaattggggtgatgatgattgcattaagatactaaaaaactgcaagaaagctatttctggaaaagagaaaggaggaaaa
34949889
T
Q
177
gtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagt
235
Q
||||| || ||||| |||||||||||||||| |||||||| |||||||| ||||||||
T
34949888
gtgataatcatagatgttgtgataaatgaaaaacaagatgaacatgaaatgacagaagt
34949830
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 34945502 - 34945430
Alignment:
Q
163
agaaaggaggaaaagtgatcataatagacattgtgataaatgaaaagcaagatgagcatgaaataacagaagt
235
Q
||||||||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||
T
34945502
agaaaggaggaaaagtgataatcatagatgcagtgataaatgaaaaacaagatgaacatgaaatgacagaagt
34945430
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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