View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_62 (Length: 272)

Name: NF0063_2D_low_62
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_62
NF0063_2D_low_62
[»] chr1 (14 HSPs)
chr1 (1-268)||(8400370-8400641)
chr1 (8-89)||(9997844-9997925)
chr1 (8-89)||(1114700-1114779)
chr1 (8-89)||(27930945-27931026)
chr1 (8-89)||(28971008-28971089)
chr1 (14-73)||(12701790-12701849)
chr1 (14-89)||(45559586-45559661)
chr1 (8-89)||(8061513-8061593)
chr1 (8-89)||(19998087-19998168)
chr1 (8-89)||(27225853-27225934)
chr1 (16-89)||(28044655-28044728)
chr1 (8-89)||(33126669-33126750)
chr1 (8-89)||(35383409-35383489)
chr1 (8-88)||(41575658-41575738)
[»] chr6 (5 HSPs)
chr6 (10-89)||(1474576-1474655)
chr6 (14-89)||(32114229-32114304)
chr6 (8-89)||(14224306-14224387)
chr6 (8-89)||(33275930-33276011)
chr6 (10-78)||(1468439-1468507)
[»] chr4 (13 HSPs)
chr4 (10-89)||(36608381-36608460)
chr4 (9-89)||(21037476-21037555)
chr4 (8-88)||(36650782-36650862)
chr4 (8-89)||(37709385-37709466)
chr4 (8-89)||(56309592-56309673)
chr4 (42-96)||(16554321-16554375)
chr4 (8-89)||(7479159-7479240)
chr4 (8-81)||(7852203-7852276)
chr4 (8-89)||(12268008-12268089)
chr4 (8-89)||(26808559-26808640)
chr4 (8-89)||(51019829-51019910)
chr4 (9-89)||(33046738-33046818)
chr4 (8-88)||(47930738-47930818)
[»] chr5 (8 HSPs)
chr5 (10-89)||(5699632-5699712)
chr5 (10-81)||(18523652-18523722)
chr5 (8-89)||(36762292-36762373)
chr5 (14-78)||(7448385-7448449)
chr5 (9-89)||(12585786-12585866)
chr5 (22-89)||(950851-950918)
chr5 (8-89)||(27979409-27979491)
chr5 (8-89)||(10687766-10687847)
[»] chr8 (9 HSPs)
chr8 (8-89)||(24809764-24809845)
chr8 (8-89)||(40133923-40134004)
chr8 (8-82)||(12961759-12961833)
chr8 (8-89)||(43776811-43776892)
chr8 (8-89)||(3940033-3940114)
chr8 (8-89)||(5872544-5872625)
chr8 (43-88)||(30461015-30461060)
chr8 (8-94)||(28911031-28911116)
chr8 (14-89)||(34925226-34925302)
[»] chr3 (9 HSPs)
chr3 (8-89)||(1363868-1363949)
chr3 (8-89)||(11388580-11388661)
chr3 (8-89)||(40036211-40036292)
chr3 (4-89)||(54942266-54942348)
chr3 (8-89)||(8449631-8449712)
chr3 (8-89)||(11397179-11397260)
chr3 (8-89)||(45241350-45241431)
chr3 (11-77)||(25957472-25957535)
chr3 (45-89)||(26057605-26057649)
[»] chr2 (7 HSPs)
chr2 (8-73)||(1537308-1537373)
chr2 (8-89)||(4437795-4437876)
chr2 (16-89)||(14736309-14736381)
chr2 (8-89)||(31709244-31709325)
chr2 (8-89)||(32023148-32023228)
chr2 (8-89)||(34830927-34831008)
chr2 (8-89)||(41077671-41077752)
[»] chr7 (5 HSPs)
chr7 (14-73)||(4959028-4959083)
chr7 (8-86)||(30870089-30870167)
chr7 (8-89)||(1573570-1573651)
chr7 (14-89)||(26902835-26902911)
chr7 (8-88)||(36889592-36889672)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-89)||(351446-351527)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8400641 - 8400370
Alignment:
Q  1 atcataaacattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttatttattta---- 96  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  8400641 atcataaacattgaaattaaaaagaaattaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttatttatttattta 8400542  T
Q  97 aaatgggttagagtgtcgtacataaataactcctaaaggaaagcttgtaattcaagtattatttagaggagaggactatgatttattttaaacttttaat 196  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8400541 aaatgggttagagtgtcgtacataaataactcataaaggaaagcttgtaattcaagtattatttagaggagaggattatgatttattttaaacttttaat 8400442  T
Q  197 tttaaggtgtatattataatacaagagaggatgggtataattcaatcttctattagcggatgagagtataat 268  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8400441 tttaaggtgtatattataatataagagaggatgggtgtaattcaatcttctattagcggatgagagtataat 8400370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 9997844 - 9997925
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  9997844 acatttaaattataaagaaatgaatttatttttcttaaatggtagttcaaaattagtatatatcataaaaatatttatttat 9997925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 1114700 - 1114779
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||||||||||||| || ||| || |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  1114700 acatttaaattataaagaaatgaatt-ttttttcttaaatggtagttcaaaattagtatatatcat-aaaatatttatttat 1114779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 27931026 - 27930945
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||| |||||||||||| ||| || |||||| ||||||||||   | ||||||| |||||||||||||||    
T  27931026 acatttaaattataaataaatgaattattttttcttaaatggtggatcaaaattaaaatatatcataaaaatatttatttat 27930945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 28971089 - 28971008
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | |||||||| ||| ||||||| |||||||||||||||    
T  28971089 acatttaaattataaagaaatgaattcctttttcttaaatggtggttcaaaattagtatatatcataaaaatatttatttat 28971008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 12701790 - 12701849
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcat 73  Q
    ||||||||||||||| ||||||| | ||||||||| | ||||||||| |||| |||||||    
T  12701790 aaattaaaaagaaataaattattttgttttgaatgctggatcaaaatatgtagatatcat 12701849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 45559586 - 45559661
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||||| |||||||||||||||| ||| || |||||| | ||||||||  || ||||| | |||||||||||||||    
T  45559586 aaattataaagaaatgaattattttttcttaaatggtggttcaaaattaatatatatcttaaaaatatttatttat 45559661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 8061513 - 8061593
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  8061513 acatttaaattataaagaaatgaattaat-tttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 8061593  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 19998087 - 19998168
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | |||||||| ||| ||||||| ||||||| |||||||    
T  19998087 acatttaaattataaagaaatgaatttatttttcttaaatggtggttcaaaattagtatatatcatcaaaatatatatttat 19998168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 27225934 - 27225853
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||| ||| ||||||||  || ||||||| |||||||||||||||    
T  27225934 acatttaaattataaagaaatgaatttatttttcttaaatgatagttcaaaattaatatatatcataaaaatatttatttat 27225853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 28044728 - 28044655
Alignment:
Q  16 attaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||| |||||||||||||||| ||| || |||||| | ||||||||   | ||||||| |||||||||||||||    
T  28044728 attataaagaaatgaattattttttcttaaatggtggttcaaaattaaaatatatcataaaaatatttatttat 28044655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 33126669 - 33126750
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || | || ||| |||||||| ||| ||||||| |||||||||||||||    
T  33126669 acatttaaattataaagaaatgaatttatttttcttaagtgatagttcaaaattagtatatatcataaaaatatttatttat 33126750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 35383409 - 35383489
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||| | |||||||||||| ||| |||||| |||||| | |||||| | ||| ||||||| |||||||||||||||    
T  35383409 acatttaaatcataaagaaatgaat-atttttttttaaatggtggttcaaaaatagtatatatcataaaaatatttatttat 35383489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 41575658 - 41575738
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttattta 88  Q
    ||||| |||||| ||| |||||||||  | ||| || |||||| | |||||||| ||| ||||||| ||||||||||||||    
T  41575658 acatttaaattataaataaatgaatttatttttcttaaatggtggttcaaaattagtatatatcataaaaatatttattta 41575738  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 1474576 - 1474655
Alignment:
Q  10 attgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||||||||||||||||| ||||| | ||| ||||||| | |||||||||||||| ||||||| |||||||||||||||    
T  1474576 attgaaattaaaaagaaataaattactttttcttgaatgatggatcaaaatttgtagatatcataaaaatatttatttat 1474655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 32114229 - 32114304
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||||| |||||||||||||| | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  32114229 aaattataaagaaatgaattaatttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 32114304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 14224306 - 14224387
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||| |||||||||||| ||| || |||||| | ||||||||  |  ||||||| |||||||||||||||    
T  14224306 acatttaaattataaaaaaatgaattattttttcttaaatggtggttcaaaattaatttatatcataaaaatatttatttat 14224387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 33276011 - 33275930
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||| ||| |||||||| ||| |||||||  ||||||||||||||    
T  33276011 acatttaaattataaagaaatgaatttatttttcttaaatgatagttcaaaattagtatatatcatataaatatttatttat 33275930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 1468439 - 1468507
Alignment:
Q  10 attgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaa 78  Q
    ||||||||||||||||||||||||| | ||| ||||| | | |||  ||||||||| ||||||| ||||    
T  1468439 attgaaattaaaaagaaatgaattactttttcttgaacgatggatataaatttgtagatatcataaaaa 1468507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 36608381 - 36608460
Alignment:
Q  10 attgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| ||||||||||||||||||||| ||| | ||||||| |||||||||||||| | || || |||||||||||||||    
T  36608381 attgatattaaaaagaaatgaattattttttatggaatggtggatcaaaatttgtagaaattataaaaatatttatttat 36608460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 21037555 - 21037476
Alignment:
Q  9 cattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||| |||||| ||||||||||||| || ||| || |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  21037555 catttaaattataaagaaatgaattttt-tttcttaaatggtagttcaaaattagtatatatcataaaaatatttatttat 21037476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 36650862 - 36650782
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttattta 88  Q
    ||||| |||||| |||||||||||||  | ||| || |||||||| |||||||| ||| ||||||| ||||||||||||||    
T  36650862 acatttaaattataaagaaatgaatttatttttcttaaatggtagttcaaaattagtatatatcataaaaatatttattta 36650782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 37709385 - 37709466
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | |||||| |||||| | ||||||||  || ||||||| |||||||||||||||    
T  37709385 acatttaaattataaagaaatgaatttattttttttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 37709466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 56309673 - 56309592
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  56309673 acatttaaattataaagaaatgaattaatttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 56309592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 16554321 - 16554375
Alignment:
Q  42 ttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttatttattta 96  Q
    ||||||| | ||| |||||||||| ||||||| ||||||||||| ||||||||||    
T  16554321 ttgaatgatggattaaaatttgtagatatcataaaaatatttatatatttattta 16554375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 7479159 - 7479240
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | | ||||||  || ||||||| |||||||||||||||    
T  7479159 acatttaaattataaagaaatgaattaatttttcttaaatggtggtttaaaattaatatatatcataaaaatatttatttat 7479240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 7852203 - 7852276
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatat 81  Q
    ||||| |||||| |||||||||||||  | ||| || |||||||| |||||||| ||| ||||||| |||||||    
T  7852203 acatttaaattataaagaaatgaatttatttttcttaaatggtagttcaaaattagtatatatcataaaaatat 7852276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 12268008 - 12268089
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||| |||||||||||| ||| || |||||| | ||||||||   | ||||||| |||||||||||||||    
T  12268008 acatttaaattataaaaaaatgaattattttttcttaaatggtggttcaaaattaaaatatatcataaaaatatttatttat 12268089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 26808640 - 26808559
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||| | |||||||||||||| | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  26808640 acatttaaatcataaagaaatgaattaatttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 26808559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 51019910 - 51019829
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||| ||| ||||||||  || ||||||| |||||||||||||||    
T  51019910 acatttaaattataaagaaatgaatttatttttcttaaatgatagttcaaaattaatatatatcataaaaatatttatttat 51019829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 33046818 - 33046738
Alignment:
Q  9 cattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||| |||||| |||||||||||||  | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  33046818 catttaaattataaagaaatgaatttatttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 33046738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 47930818 - 47930738
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttattta 88  Q
    ||||| |||||| ||| |||||||||  | ||| ||||||||| | |||||||| ||| ||||||  ||||||||||||||    
T  47930818 acatttaaattataaataaatgaatttatttttcttgaatggtggttcaaaattagtatatatcaaaaaaatatttattta 47930738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 5699712 - 5699632
Alignment:
Q  10 attgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcat-gaaaatatttatttat 89  Q
    ||||||||||||||||||||||||| | ||| ||||||| ||||| |||||||||| | |||||  |||||||||||||||    
T  5699712 attgaaattaaaaagaaatgaattactttttattgaatgatagattaaaatttgtagagatcataaaaaatatttatttat 5699632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 18523652 - 18523722
Alignment:
Q  10 attgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatat 81  Q
    |||||||||| |||||||||||||||| ||| ||||||| | ||||||| |||||| ||||||| |||||||    
T  18523652 attgaaattagaaagaaatgaattatt-tttcttgaatgatggatcaaagtttgtagatatcataaaaatat 18523722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 36762373 - 36762292
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| || ||| |||||||||||| ||| |||||| |||||| | ||||||||  || ||||||| |||||||||||||||    
T  36762373 acatttaagttataaagaaatgaataatttttttttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 36762292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 7448385 - 7448449
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaa 78  Q
    |||||||||| |||||||||| | ||| ||||||| || ||||||||||||| ||||||| ||||    
T  7448385 aaattaaaaataaatgaattactttttcttgaatgataaatcaaaatttgtagatatcataaaaa 7448449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12585866 - 12585786
Alignment:
Q  9 cattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||| |||||| |||||||||||||  | ||| || |||| ||| |||||||| ||| ||||||| |||||||||||||||    
T  12585866 catttaaattataaagaaatgaatttatttttcttaaatgatagttcaaaattcgtatatatcataaaaatatttatttat 12585786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 950851 - 950918
Alignment:
Q  22 aagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||||||||| | | ||| ||||||| | |||||||||| ||| ||||||| |||||||||||||||    
T  950851 aagaaatgaatgagtttttcttgaatgatggatcaaaattagtagatatcataaaaatatttatttat 950918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 27979491 - 27979409
Alignment:
Q  8 acattgaaattaaaaagaaatgaatt-attgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||||||||||||| ||| ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  27979491 acatttaaattataaagaaatgaatttattttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 27979409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 10687847 - 10687766
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||| |||||||||  | ||| || |||||| | |||||||| ||| ||||||| |||||||||||||||    
T  10687847 acatttaaattataaataaatgaatttgtttttcttaaatggtggttcaaaattagtatatatcataaaaatatttatttat 10687766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24809845 - 24809764
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  24809845 acatttaaattataaagaaatgaatttatttttcttaaatggtagttcaaaattagtatatatcataaaaatatttatttat 24809764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 40133923 - 40134004
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||||||||||||||||||| ||||| || | | |||||| || |||||||||| ||| ||||||  |||||||||||||||    
T  40133923 acattgaaattaaaaagaaacgaattgttttgtcttgaatagtggatcaaaattagtagatatcacaaaaatatttatttat 40134004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 12961833 - 12961759
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatt 82  Q
    ||||||||| || |||||||||||||||| ||| ||||||| | ||||||| |||||| |||| || ||||||||    
T  12961833 acattgaaactataaagaaatgaattattttttcttgaatgatggatcaaagtttgtagatattataaaaatatt 12961759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 43776811 - 43776892
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| ||||||||||   | ||||||| |||||||||||||||    
T  43776811 acatttaaattataaagaaatgaattaatttttcttaaatggtggatcaaaattaacatatatcataaaaatatttatttat 43776892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 3940033 - 3940114
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| |  |||||| | |||||||| ||| ||||||| |||||||||||||||    
T  3940033 acatttaaattataaagaaatgaatttatttttctcaaatggtggctcaaaattagtatatatcataaaaatatttatttat 3940114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 5872544 - 5872625
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  5872544 acatttaaattataaagaaatgaatttatttttctttaatggtggctcaaaattaatatatatcataaaaatatttatttat 5872625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 30461015 - 30461060
Alignment:
Q  43 tgaatggtagatcaaaatttgtaaatatcatgaaaatatttattta 88  Q
    |||||||| ||||||||||| || |||||||| |||||||||||||    
T  30461015 tgaatggtggatcaaaatttttagatatcatgcaaatatttattta 30461060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 28911031 - 28911116
Alignment:
Q  8 acattgaaattaaaaagaaa-tgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttatttatt 94  Q
    ||||| |||||||||| ||| ||||||||| |||||  |||||   ||||||||||||| |||| || ||||||||||||||| ||||    
T  28911031 acatttaaattaaaaataaaatgaattatttttttt--aatggcgaatcaaaatttgtagatataattaaaatatttatttatgtatt 28911116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 34925226 - 34925302
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgta-aatatcatgaaaatatttatttat 89  Q
    |||||| |||||||||||||| | |||||| |||||| | ||||||||  || | |||||| |||||||||||||||    
T  34925226 aaattataaagaaatgaattaattttttttaaatggtggttcaaaattaatatattatcataaaaatatttatttat 34925302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 1363868 - 1363949
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | |||||||| ||| ||||||| |||||||||||||||    
T  1363868 acatttaaattataaagaaatgaatttatttttcttaaatggtggttcaaaattagtatatatcataaaaatatttatttat 1363949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 11388661 - 11388580
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  11388661 acatttaaattataaagaaatgaattaatttttctttaatggtggttcaaaattaatatatatcataaaaatatttatttat 11388580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 40036211 - 40036292
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||||| ||| |  |||||| | ||||||||  || ||||||| |||||||||||||||    
T  40036211 acatttaaattataaagaaatgaattattttttctaaaatggtggttcaaaattaatatatatcataaaaatatttatttat 40036292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 54942348 - 54942266
Alignment:
Q  4 ataaacattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||||||||||| |||||| |||||  ||||||||| |||||||||||||   || ||| ||||||||||| ||||||    
T  54942348 ataaatattgaaattaaaaataaatga-ttatt--tttttgaattgtagatcaaaattataaattataatgaaaatattgatttat 54942266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 8449631 - 8449712
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | ||||||||  || |||||||  ||||||||||||||    
T  8449631 acatttaaattataaagaaatgaattaatttttcttaaatggtggttcaaaattaatagatatcatagaaatatttatttat 8449712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 11397260 - 11397179
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || || ||| | ||||||||  || ||||||| |||||||||||||||    
T  11397260 acatttaaattataaagaaatgaattaatttttcttaaagggtggttcaaaattaatatatatcataaaaatatttatttat 11397179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 45241431 - 45241350
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||||| ||| || || ||| | ||||||||   | ||||||| |||||||||||||||    
T  45241431 acatttaaattataaagaaatgaattattttttcttaaaaggtggttcaaaattaaaatatatcataaaaatatttatttat 45241350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 25957472 - 25957535
Alignment:
Q  11 ttgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaa 77  Q
    ||||||| |||||||||||||||||  ||||   |||||| |||||||||||||| ||||| |||||    
T  25957472 ttgaaataaaaaagaaatgaattatattttt---aatggttgatcaaaatttgtagatatcttgaaa 25957535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 26057605 - 26057649
Alignment:
Q  45 aatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  26057605 aatggtagttcaaaattagtatatatcataaaaatatttatttat 26057649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 1537373 - 1537308
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcat 73  Q
    |||||||||||||||||||||  |||||| ||| ||| ||| | |||||||||||||| |||||||    
T  1537373 acattgaaattaaaaagaaatagattattttttcttggatgatggatcaaaatttgtagatatcat 1537308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 4437795 - 4437876
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||||| ||| || || ||| | ||||||||   | ||||||| |||||||||||||||    
T  4437795 acatttaaattataaagaaatgaattattttttcttaaaaggtggttcaaaattaaaatatatcataaaaatatttatttat 4437876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 14736381 - 14736309
Alignment:
Q  16 attaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||| |||||||||||||  | |||||| |||||| | |||||||| ||| ||||||| |||||||||||||||    
T  14736381 attataaagaaatgaatttat-ttttttaaatggtggttcaaaattagtatatatcataaaaatatttatttat 14736309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 31709325 - 31709244
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||| ||| ||||||||  || ||||||| |||||||||||||||    
T  31709325 acatttaaattataaagaaatgaatttatttttcttaaatgatagttcaaaattaatatatatcataaaaatatttatttat 31709244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 32023228 - 32023148
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||||| ||| || ||| || | ||||||||  || ||||||| |||||||||||||||    
T  32023228 acatttaaattagaaagaaatgaattattttttcttaaat-gtggttcaaaattaatatatatcataaaaatatttatttat 32023148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 34831008 - 34830927
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||||  |||||||  | ||| || |||||| | |||||||||||| ||||||| |||||||||||||||    
T  34831008 acatttaaattataaagtgatgaatttatttttcttaaatggtggttcaaaatttgtatatatcataaaaatatttatttat 34830927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 41077752 - 41077671
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| ||| |||| ||||||| ||| || |||||| | ||||||||  || ||||||| |||||||||||||||    
T  41077752 acatttaaattataaaaaaataaattattttttcttaaatggtggttcaaaattaatatatatcataaaaatatttatttat 41077671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 4959028 - 4959083
Alignment:
Q  14 aaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcat 73  Q
    ||||||||||||||||||||    |||||| |||||| |||||||||||||| |||||||    
T  4959028 aaattaaaaagaaatgaatt----ttttttaaatggtggatcaaaatttgtagatatcat 4959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 30870167 - 30870089
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatt 86  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | |||||||| ||| ||||||| ||||||||||||    
T  30870167 acatttaaattataaagaaatgaatttatttttcttaaatggtggttcaaaattagtatatatcataaaaatatttatt 30870089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 1573570 - 1573651
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||| | ||| || |||||| | ||||||||   | ||||||| |||||||||||||||    
T  1573570 acatttaaattataaagaaatgaattaatttttcttaaatggtggttcaaaattaaaatatatcataaaaatatttatttat 1573651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 26902911 - 26902835
Alignment:
Q  14 aaattaaaaagaaatgaattattgtttt-ttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    |||||| ||||||||||||| || |||| || |||||| | |||||||| ||| ||||||| ||||| |||||||||    
T  26902911 aaattataaagaaatgaattttttttttcttaaatggtggttcaaaattagtatatatcataaaaatgtttatttat 26902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 36889672 - 36889592
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttattta 88  Q
    ||||| |||||| ||||| |||||||  | ||| || |||||| | |||||||| ||| |||||||||| |||||||||||    
T  36889672 acatttaaattataaagacatgaatttatatttcttaaatggtggttcaaaattagtatatatcatgaacatatttattta 36889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 351527 - 351446
Alignment:
Q  8 acattgaaattaaaaagaaatgaattattgttttttgaatggtagatcaaaatttgtaaatatcatgaaaatatttatttat 89  Q
    ||||| |||||| |||||||||||||  | ||| || |||||| | |||||||| ||| ||||||| ||||||| |||||||    
T  351527 acatttaaattataaagaaatgaatttatttttcttaaatggtggttcaaaattagtatatatcataaaaatatatatttat 351446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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