View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_63 (Length: 263)
Name: NF0063_2D_low_63
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_63
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 52622852 - 52623094
Alignment:
Q
1
atattgaatcaataagagaggcacctaaaaaataaattaattaaactacacgtgtctgaccaacgtcccaatttcatatacctaatgtgaggaattgggg
100
Q
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
52622852
atattgaatcaataagagaggcacctaaaaaattaattaattaaactacacgtgtctaaccaacgtcccaatttcatatacctaatgtgaggaattgggg
52622951
T
Q
101
atacacgtgttttcannnnnnnnnnctttccctgattatttgctagctttctgtaacaaagcaatctaatatctaagcattatcaatttcccacctctaa
200
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52622952
atacacgtgttttcattttttt----tttccctgattatttgctagctttctgtaacaaagcaatctaatatctaagcattatcaatttcccacctctaa
52623047
T
Q
201
ttctaatttaattaattaaccatcaattaataaattattcttctgat
247
Q
|||||||||||||||||||||||||||||||||||||||||||||||
T
52623048
ttctaatttaattaattaaccatcaattaataaattattcttctgat
52623094
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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