View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_65 (Length: 262)

Name: NF0063_2D_low_65
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_65
NF0063_2D_low_65
[»] chr7 (12 HSPs)
chr7 (11-246)||(20067357-20067592)
chr7 (143-246)||(20071433-20071536)
chr7 (161-245)||(20078453-20078537)
chr7 (80-234)||(20048707-20048860)
chr7 (134-245)||(20054267-20054377)
chr7 (165-223)||(20084769-20084827)
chr7 (136-234)||(20038539-20038639)
chr7 (161-228)||(20022528-20022595)
chr7 (143-234)||(20116058-20116149)
chr7 (143-246)||(20097430-20097532)
chr7 (143-227)||(20044112-20044196)
chr7 (161-227)||(20033004-20033070)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 20067592 - 20067357
Alignment:
Q  11 tgagacggatatccataacttataggctttctacccaccgtaatggtaggtggtggnnnnnnntggtgaggccaatcctcttctggttctaatataggca 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||       |||| |||||||||||||||| |||||||||||||||    
T  20067592 tgagacggatatccataacttataggctttctacccaccataacggtaggtggtggaaaaaaatggtcaggccaatcctcttctagttctaatataggca 20067493  T
Q  111 catacccaattgcattacgcttgtcactcactacagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatgtttggatc 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20067492 catacccaattgcattacgcttgtcactcactacagtcgttagcaccagcattccaagtataagtaatactagtgaatatttagaggccatgtttggatc 20067393  T
Q  211 gaattttaatttacacaaatggaataagtgagacag 246  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20067392 gaattttaatttacataaatggaataagtgagacag 20067357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 20071536 - 20071433
Alignment:
Q  143 acagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatggaataagtgag 242  Q
    ||||| |||| ||||||  ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||    
T  20071536 acagtggtaaccaccatcgttccaagtagaagtaatactaatgagtatgtagaggccatgtttggatcgaattttaatttacacaaatggaatgagcgag 20071437  T
Q  243 acag 246  Q
    ||||    
T  20071436 acag 20071433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 20078537 - 20078453
Alignment:
Q  161 attccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatggaataagtgagaca 245  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  20078537 attccaagtagaagtaatactattgagtatgtagaggccatgtttggattgaattttaatttacacaaatggaatgagcgagaca 20078453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 20048860 - 20048707
Alignment:
Q  80 ggccaatcctcttctggttctaatataggcacatacccaattgcattacgcttgtcactcactacagtcgtaagcaccataattccaagtagaagtaata 179  Q
    ||||||||||| ||||| ||||| || ||| |||||||||    |||| ||   |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  20048860 ggccaatcctcctctggatctaacattggcgcatacccaaaactattatgcccatcactcactacagtagtaagaaccatcattccaagtagaagtaata 20048761  T
Q  180 ctagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatggaa 234  Q
    || |||| ||||||||||||||||||  || | ||||||||| ||||||||||||    
T  20048760 cttgtgagtatttagaggccatgtttttatag-attttaattcacacaaatggaa 20048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 20054377 - 20054267
Alignment:
Q  134 tcactcactacagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatgga 233  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||   || ||| ||| ||| |||||||||||    
T  20054377 tcactcactactgtggtaagtaccatcattccaagtagaagtaatactagtgagtatttagaggccatgttattatggaa-tttgattcacacaaatgga 20054279  T
Q  234 ataagtgagaca 245  Q
    |  |||||||||    
T  20054278 aagagtgagaca 20054267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 20084827 - 20084769
Alignment:
Q  165 caagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaattta 223  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  20084827 caagtagaagtaatactattgaatatgtagaggccatgtttggatcgaattttaattta 20084769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 20038639 - 20038539
Alignment:
Q  136 actcactacagtcgtaagcaccataattccaagtagaagt---aatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatgg 232  Q
    |||||||||||| ||||| ||||| |||||||||||||||   |||||| |||| ||||||||||||||||||  || | ||||||||| ||||||||||    
T  20038639 actcactacagtagtaagaaccatcattccaagtagaagtaataatacttgtgagtatttagaggccatgtttttatag-attttaattcacacaaatgg 20038541  T
Q  233 aa 234  Q
    ||    
T  20038540 aa 20038539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 20022595 - 20022528
Alignment:
Q  161 attccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaa 228  Q
    |||||||||| ||||||||||| ||||||||||||| |||| ||| ||||||||||| ||| ||||||    
T  20022595 attccaagtaaaagtaatactaatgaatatttagagcccatattttgatcgaattttgattaacacaa 20022528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 20116149 - 20116058
Alignment:
Q  143 acagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacacaaatggaa 234  Q
    ||||| |||| || ||| |||||||||||||||||||||| ||| ||| ||||||||||||||  |||||||||| ||| |||  |||||||    
T  20116149 acagtggtaaccatcatcattccaagtagaagtaatactattgagtatgtagaggccatgtttttatcgaattttgattcacattaatggaa 20116058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 20097532 - 20097430
Alignment:
Q  143 acagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatg-tttggatcgaattttaatttacacaaatggaataagtga 241  Q
    ||||| |||| || ||| ||||||| |||||||||||||| ||| ||| ||||||||||| |||  |||||||||  ||||||||||||||||| || ||    
T  20097532 acagtggtaaccatcatcattccaaatagaagtaatactattgagtatgtagaggccatgtttttaatcgaattt--atttacacaaatggaatgagcga 20097435  T
Q  242 gacag 246  Q
    |||||    
T  20097434 gacag 20097430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 20044196 - 20044112
Alignment:
Q  143 acagtcgtaagcaccataattccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacaca 227  Q
    ||||| |||||||  || |||||||||| ||||||||||| |||||||||||||  ||| ||| ||||||||||| ||| |||||    
T  20044196 acagtggtaagcattatcattccaagtaaaagtaatactaatgaatatttagagctcatattttgatcgaattttgattgacaca 20044112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 20033070 - 20033004
Alignment:
Q  161 attccaagtagaagtaatactagtgaatatttagaggccatgtttggatcgaattttaatttacaca 227  Q
    |||||||||| ||||||||||| |||||||||||||  ||| ||| |||| |||||| ||| |||||    
T  20033070 attccaagtaaaagtaatactaatgaatatttagagctcatattttgatcaaattttgattgacaca 20033004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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