View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_7 (Length: 721)
Name: NF0063_2D_low_7
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_7 |
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| [»] scaffold0026 (4 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 21 - 704
Target Start/End: Original strand, 102062 - 102745
Alignment:
| Q |
21 |
tcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102062 |
tcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacatg |
102161 |
T |
|
| Q |
121 |
gaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagt |
220 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102162 |
gaagagaacacaggcagttgtttcaccgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagt |
102261 |
T |
|
| Q |
221 |
ttttcaagaggtaagtcatcattattaactttttcaactcttggtttgtttcctgnnnnnnntttcatttaggcttgtattatatacactattatttaac |
320 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
102262 |
ttttcaagaggtaagtcattagtattaactttttcaactcttggtttgtttcctgaaaaaaaattcatttaggcttgtattatatacactattatttaac |
102361 |
T |
|
| Q |
321 |
acaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102362 |
acaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttc |
102461 |
T |
|
| Q |
421 |
ctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaattac |
520 |
Q |
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| T |
102462 |
ctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaattac |
102561 |
T |
|
| Q |
521 |
aattaattaggctctaagctatttgtgtctcttaaattgttttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102562 |
aattaattaggctctaagctatttgtgtctcttaaattgttatagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaat |
102661 |
T |
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| Q |
621 |
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact |
704 |
Q |
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| T |
102662 |
caaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact |
102745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 100312 - 100441
Alignment:
| Q |
348 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
447 |
Q |
| |
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|||| ||||||||| | |||||||||||||||||||| ||| | || |||||||||| |||||||||||| |||||||| || |||||||||||||||| |
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| T |
100312 |
tgacttgttagaatactggagattgctccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
100411 |
T |
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| Q |
448 |
ctcatgccatgtctgtctttctcatggtaa |
477 |
Q |
| |
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| ||||| |||||||||||||||||||||| |
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| T |
100412 |
cacatgctatgtctgtctttctcatggtaa |
100441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 561 - 688
Target Start/End: Original strand, 100631 - 100758
Alignment:
| Q |
561 |
tttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctgg |
660 |
Q |
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||||||||||||| ||||||||||||||| | |||||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| ||| |||| |
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| T |
100631 |
tttagacatgtgagtcagcagttcaactgcgcaaggctggaaaagtcacagtcagagaatcaaatttgaagaaattaggtgccactcatttcaaaactgg |
100730 |
T |
|
| Q |
661 |
tgtaaaagatgagcattttgaggtaata |
688 |
Q |
| |
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|||| ||||||| ||||||||||||||| |
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| T |
100731 |
tgtacaagatgaacattttgaggtaata |
100758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 100087 - 100182
Alignment:
| Q |
140 |
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag |
235 |
Q |
| |
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||||||| || || ||||| ||||||||||| || |||||||||||||| ||||| || || | || |||||||||||||||||||||| ||||| |
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| T |
100087 |
gtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaag |
100182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 94 - 515
Target Start/End: Complemental strand, 25848164 - 25847731
Alignment:
| Q |
94 |
tattattcttaatcagcagttaacatggaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaaga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25848164 |
tattattcttaatcagcagttaacatggaagagaacacaggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagt |
25848065 |
T |
|
| Q |
194 |
acaactcagaagatctgagtctcaagtttttcaagaggtaagtcatca----------ttattaactttttcaactcttggtttgtttcctgnnnnnnnt |
283 |
Q |
| |
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||||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| || |
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| T |
25848064 |
acaactctggagatctgagtctcaagtttttcaagaagtaagtcattaatttcatttattattaactttttcaactcttggtttgttttatgatgaaaaa |
25847965 |
T |
|
| Q |
284 |
-----ttcatttaggcttgtattatatacactattatttaacacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccac |
378 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
25847964 |
aaaaattcatttaggcttgtaatatatacactattatttaactcaacattatttttgaa---ttgattatgacatgttagaatccttgagattgctccac |
25847868 |
T |
|
| Q |
379 |
cagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaac |
478 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25847867 |
cagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagcctcatgccatgtctgtctttcttatggtaag |
25847768 |
T |
|
| Q |
479 |
cttgcttaacacttagcatccattaatttattgatta |
515 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||| |||| |
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| T |
25847767 |
cttacttaacagttattatccattaatttattaatta |
25847731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 563 - 702
Target Start/End: Complemental strand, 25847654 - 25847515
Alignment:
| Q |
563 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
662 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| |||||| |
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| T |
25847654 |
tagacatgtgaatcagcagttcaactacgtaaggctggtaaagtcactgttagagaatcaaacttgaaaaagttaggtgccactcatttcaaaactggtg |
25847555 |
T |
|
| Q |
663 |
taaaagatgagcattttgaggtaatactaacatactacta |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
25847554 |
taaaagatgagcattttgaggtaatactaacatactacta |
25847515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 348 - 477
Target Start/End: Complemental strand, 25849875 - 25849746
Alignment:
| Q |
348 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
447 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
25849875 |
tgacttgttagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagcttaagc |
25849776 |
T |
|
| Q |
448 |
ctcatgccatgtctgtctttctcatggtaa |
477 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
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| T |
25849775 |
ctcatgctatgtctgtttttctcatggtaa |
25849746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 25845656 - 25845535
Alignment:
| Q |
356 |
tagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgcc |
455 |
Q |
| |
|
|||||| ||||||||||||||| ||||| | |||| ||||||||||| | ||||||||| |||||||||||| |||| | ||||||||||| |||||| |
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| T |
25845656 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaacaccaagctcaagccacatgcc |
25845557 |
T |
|
| Q |
456 |
atgtctgtctttctcatggtaa |
477 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25845556 |
atgtctgtctttctcatggtaa |
25845535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 563 - 686
Target Start/End: Complemental strand, 25849594 - 25849471
Alignment:
| Q |
563 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| ||||| | || || |||||||| |||||||||||||||||||||||||| ||| |||||| |
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|
| T |
25849594 |
tagacatgtgaatcagcagttcagctgcgtaaggctggtaaagtcagagtgagagaatcaaatttgaagaagttaggtgccactcatttcaaaactggtg |
25849495 |
T |
|
| Q |
663 |
taaaagatgagcattttgaggtaa |
686 |
Q |
| |
|
| ||||||| ||||||||||||| |
|
|
| T |
25849494 |
tgcaagatgaacattttgaggtaa |
25849471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 25845846 - 25845792
Alignment:
| Q |
140 |
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaa |
194 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25845846 |
gtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaa |
25845792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 685
Target Start/End: Complemental strand, 25845303 - 25845181
Alignment:
| Q |
563 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
662 |
Q |
| |
|
|||||||||||||||||||||||| || | || | || ||||| || || || ||||||| |||||| || |||||||| | |||||||||| ||||| |
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|
| T |
25845303 |
tagacatgtgaatcagcagttcaattgcgaaaatccggtaaagttacggtcagagaatcaagcttgaaaaaattaggtgctaaccattttaaatatggtg |
25845204 |
T |
|
| Q |
663 |
taaaagatgagcattttgaggta |
685 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
25845203 |
tagtagacgagcattttgaggta |
25845181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 25848211 - 25848164
Alignment:
| Q |
25 |
tatataccataaaacctgtaccatagcacaagctacaaaattaacaat |
72 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
25848211 |
tatataccatgaaaactgtaccatagcacaagctacaaaatcaacaat |
25848164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 25850105 - 25850011
Alignment:
| Q |
141 |
tttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag |
235 |
Q |
| |
|
|||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||||| || ||||| |
|
|
| T |
25850105 |
tttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtgacctgagtctcaagtttttcacgaagtaag |
25850011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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