View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_70 (Length: 259)

Name: NF0063_2D_low_70
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_70
NF0063_2D_low_70
[»] chr6 (1 HSPs)
chr6 (1-259)||(15344003-15344276)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15344003 - 15344276
Alignment:
Q  1 ggaaattctgcgcttttgcacaactcttttgaactgttgtcatctgattctgaggccaatcatggggaggctgatatgaccatttatgcttccactgcag 100  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15344003 ggaaattctgcgcttttgcaaaacttttttgaactgttgtcatctgattctgaggccaatcatggggaggctgatatgaccatttatgcttccactgcag 15344102  T
Q  101 agcagttggttgatacccggatggaaagtttggatgctcctttagagttagcttctaaccagatgggaatattggatgttccttt-aatattggatgttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||  ||||     
T  15344103 agcagttggttgatacccggatggaaagtttggatgctcctttagagttagcttctaaccagatgggaatattggatgttcctttaaagactgcctgttt 15344202  T
Q  200 ct--------------tttaaggcaccctgttcttcggaaaccaggcccttaaacaatagtgttacttctgtgt 259  Q
     |              ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15344203 gttgactgacacatgttttaaggcaccttgttcttcggaaaccaggcccttaaacaatagtgttacttctgtgt 15344276  T

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