View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_2D_low_71 (Length: 258)
Name: NF0063_2D_low_71
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 32957772 - 32957563
Alignment:
| Q |
18 |
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatactgaagaaacatgttccagaagcatcaga |
117 |
Q |
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| T |
32957772 |
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatattgaagaaacatgttccagaagcatcaga |
32957673 |
T |
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| Q |
118 |
ggatacactggcattggcatgtggaccacctccgatgatttatggggtgaagttcgatttggagaacttaggatatgatatcaagaacaacttgcttgtg |
217 |
Q |
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| T |
32957672 |
ggatacactggcattggcatgtggaccacctccgatgattcatggggtgaagttcgatttggagaacttaggatatgatatcaagaacaacttgcttgtg |
32957573 |
T |
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| Q |
218 |
ttttagtata |
227 |
Q |
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| T |
32957572 |
ttttagtata |
32957563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 32987136 - 32987048
Alignment:
| Q |
18 |
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatactgaagaaacatgttcca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
32987136 |
tgtggtatgtggtacaagaaagtaaaagagaagggtgggaatatagtgtggggttcattactgaaagtattttgaagcaacatgttcca |
32987048 |
T |
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