View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_71 (Length: 258)
Name: NF0063_2D_low_71
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_71
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 32957772 - 32957563
Alignment:
Q
18
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatactgaagaaacatgttccagaagcatcaga
117
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
32957772
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatattgaagaaacatgttccagaagcatcaga
32957673
T
Q
118
ggatacactggcattggcatgtggaccacctccgatgatttatggggtgaagttcgatttggagaacttaggatatgatatcaagaacaacttgcttgtg
217
Q
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32957672
ggatacactggcattggcatgtggaccacctccgatgattcatggggtgaagttcgatttggagaacttaggatatgatatcaagaacaacttgcttgtg
32957573
T
Q
218
ttttagtata
227
Q
||||||||||
T
32957572
ttttagtata
32957563
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 32987136 - 32987048
Alignment:
Q
18
tgtggtatgtggtacaagaaagtaaaagagaagggtggaaatataatgtgggattcattactgaaagtatactgaagaaacatgttcca
106
Q
|||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||| |||||||||||
T
32987136
tgtggtatgtggtacaagaaagtaaaagagaagggtgggaatatagtgtggggttcattactgaaagtattttgaagcaacatgttcca
32987048
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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