View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_72 (Length: 256)

Name: NF0063_2D_low_72
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_72
NF0063_2D_low_72
[»] chr3 (1 HSPs)
chr3 (49-249)||(32261303-32261503)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 32261303 - 32261503
Alignment:
Q  49 acaagcatcgtcctcgagtcttaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcattgttac 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32261303 acaagcatcgtcctcgagtattaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcattgttac 32261402  T
Q  149 ttgtttacatagtgaaggaaacgttcgtggcatgactgccctagtggaaatttgcaacccaattcaagaaagtcccttatgtgtctttgtgattcatctc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32261403 ttgtttacatagtgaaggaaacgttcgtggcatgactgccctagtggaaatttgcaacccaattcaagaaagtcccttatgtgtctttgtgattcatctc 32261502  T
Q  249 a 249  Q
    |    
T  32261503 a 32261503  T

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