View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_75 (Length: 255)
Name: NF0063_2D_low_75
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_75
[» ] chr5 (1 HSPs)
[» ] chr8 (1 HSPs)
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 43192350 - 43192604
Alignment:
Q
1
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43192350
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt
43192449
T
Q
101
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttccagacttccacttgtatatatta
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43192450
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttccagacttccacttgtatatatta
43192549
T
Q
201
gtacaaacacaataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat
255
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43192550
gtacaaacacaataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat
43192604
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 43195469 - 43195203
Alignment:
Q
1
atctaagaaaagcatataagtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactcctt
100
Q
|||||||||||||| || || ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||
T
43195469
atctaagaaaagcagatcagaagacaacaccacttacatcaaagtcccatgatggatcaccctttctttcagtaatgtcaattgcacctttaaactcctt
43195370
T
Q
101
aattgtaggtagtgggcgaggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaagttc-------cagacttccacttgta
193
Q
|||| |||||||||| || ||||||||||| | ||||||||| |||| |||||||| || ||||||||||||||||| | || ||||||||||
T
43195369
aattataggtagtggacggggacggtctccggataaatcactacagagcaacaaaatgaattcaagtgatcaagttctacacgtaacacgtccacttgta
43195270
T
Q
194
tatattagtacaaacaca-----ataggaaaaataaaagttgaggaacaaaaatcaaccttgtccat
255
Q
|||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||||||||||
T
43195269
tatattagtacaaacacacatacaaaggaaaaataaaaattgaggaactaaaaccaaccttgtccat
43195203
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 53672954 - 53672800
Alignment:
Q
19
agtagacaacactacttacatcgaagtcccatgatggatcatcctttctttcagtaatatcaactgcacccttaaactccttaattgtaggtagtgggcg
118
Q
||||||||||| ||||||||| ||||||||||||||||| | || |||||| |||||||||||||| || ||||||||| || |||||||| ||
T
53672954
agtagacaacatcacttacatcaaagtcccatgatggatcgccattcctttcaataatatcaactgcatccctaaactcctcgataaaaggtagtgtacg
53672855
T
Q
119
aggacggtctccagttaaatcactgcagatcaacaaaaagagttcaagtgatcaa
173
Q
||| ||||||| ||||||||||| ||||||||||||| |||| |||||||
T
53672854
gggataatctccagataaatcactgcccatcaacaaaaagaagtcaaatgatcaa
53672800
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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