View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_76 (Length: 238)
Name: NF0063_2D_low_76
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_76
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 55413046 - 55412814
Alignment:
Q
6
atggacatcaccaattatgaaaaagctcagtatctgcattacatgatcaacttactccttccatatctgaaacaaatttgtcatgaacaatgtgtagagg
105
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
55413046
atggacatcaccaattatgaaaaagctcagtatctgcattacatgatcaacttactccttccatatctgaaacaaatttgtcatgaacaatgtgtagagg
55412947
T
Q
106
aagatatagaagcaaaaatacaaggtattaatcttcacctatannnnnnnnnnnngttattgcattgtagaagtcaacaataataatctcttctgttagg
205
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
55412946
aagatatagaagcaaaaatacaaggtattaatcttcacctatattttttgtttttgttattgcattgtagaagtcaacaataataatctcttctgttagg
55412847
T
Q
206
aaaatcttctgagattgagataccccaaagtct
238
Q
|||||||||||||||||||||||||||||||||
T
55412846
aaaatcttctgagattgagataccccaaagtct
55412814
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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