View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_2D_low_78 (Length: 237)
Name: NF0063_2D_low_78
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_78 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0300 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2765 - 2985
Alignment:
| Q |
1 |
aaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2765 |
aaaacaaaacgtcttccaatgtgacgttcatgttttgactacagacccgaaaataagaaacattttctatagagttataaaatgacatgaacattctcaa |
2864 |
T |
|
| Q |
101 |
caaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2865 |
caaagatgttgtcatttccaccggttgattggggataagccttaggagtctcaacaaagaactactctcatcattattttcaattctatcgttgattttg |
2964 |
T |
|
| Q |
201 |
gttttaagcagttcatctaat |
221 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
2965 |
attttaagcggtccatctaat |
2985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24679361 - 24679141
Alignment:
| Q |
1 |
aaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaa |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| || |
|
|
| T |
24679361 |
aaaacaaaacatcctccaatgcgacgttcatgttttgaccactgactcgaaaataagaaacattttctatatagttataaaattacatgaacattcttaa |
24679262 |
T |
|
| Q |
101 |
caaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24679261 |
taaagatgttggtatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccctcatcattattttcaattctatcgttgattttg |
24679162 |
T |
|
| Q |
201 |
gttttaagcagttcatctaat |
221 |
Q |
| |
|
||||||| | ||||||||||| |
|
|
| T |
24679161 |
gttttaaacggttcatctaat |
24679141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 25341313 - 25341487
Alignment:
| Q |
48 |
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga |
147 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||| ||| |||||| |||| |||||| ||||||||||||| |
|
|
| T |
25341313 |
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga |
25341412 |
T |
|
| Q |
148 |
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt |
222 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25341413 |
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt |
25341487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 25345796 - 25345970
Alignment:
| Q |
48 |
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga |
147 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||| ||| |||||| |||| |||||| ||||||||||||| |
|
|
| T |
25345796 |
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga |
25345895 |
T |
|
| Q |
148 |
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt |
222 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25345896 |
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt |
25345970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University