View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_79 (Length: 237)
Name: NF0063_2D_low_79
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_79
[» ] scaffold0790 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 2299366 - 2299568
Alignment:
Q
16
tggtatacttcttgcatttttgtttttaggttgttcatctagcctttgtcgtgcttcactttttctttggagtaatctggtttagttccgctcagctgta
115
Q
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
2299366
tggtatacttcttgcatttttgtttttaggttgttcatctggcctttgtcgcgcttcactttttctttggagtaatctggtttagttccgctcagctgta
2299465
T
Q
116
gcaggctttcatgcaactttgcctctgttgtgcggtgtttcaatcgtctgctgcatcagtttgnnnnnnnccgagtgccttggttttagtgtcatggctg
215
Q
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
T
2299466
gcaggctttcatgcaactttgcttctgttgtgcggtgtttctatcgtctgctgcatcagtttgttttttt-cgagtgccttggttttagtgtcatggctg
2299564
T
Q
216
attt
219
Q
||||
T
2299565
attt
2299568
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0790 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 3449 - 3545
Alignment:
Q
75
tttttctttggagtaatctggtttagttccgctcagctgtagcaggctttcatgcaactttgcctctgttgtgcggtgtttcaatcgtctgctgcat
171
Q
|||| |||||||||||| |||||| |||| |||||||||||| ||||||||||||| ||||| |||||| ||| ||||||| ||||||||||||||
T
3449
ttttgctttggagtaatatggttttgttcagctcagctgtagtaggctttcatgcagttttgcttctgttctgcagtgtttcgatcgtctgctgcat
3545
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 38684349 - 38684445
Alignment:
Q
75
tttttctttggagtaatctggtttagttccgctcagctgtagcaggctttcatgcaactttgcctctgttgtgcggtgtttcaatcgtctgctgcat
171
Q
|||| |||||||||||| |||||| |||| |||||||| ||| || |||||||||| ||||| ||||||||| ||||||| ||||||||||||||
T
38684349
ttttgctttggagtaatatggttttgttcagctcagctatagtagactttcatgcagttttgcttctgttgtgtagtgtttctatcgtctgctgcat
38684445
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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