View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_80 (Length: 237)
Name: NF0063_2D_low_80
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_80
[» ] scaffold0300 (1 HSPs)
Alignment Details
Target: scaffold0300 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2765 - 2985
Alignment:
Q
1
aaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaa
100
Q
||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
2765
aaaacaaaacgtcttccaatgtgacgttcatgttttgactacagacccgaaaataagaaacattttctatagagttataaaatgacatgaacattctcaa
2864
T
Q
101
caaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttg
200
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
2865
caaagatgttgtcatttccaccggttgattggggataagccttaggagtctcaacaaagaactactctcatcattattttcaattctatcgttgattttg
2964
T
Q
201
gttttaagcagttcatctaat
221
Q
|||||||| || ||||||||
T
2965
attttaagcggtccatctaat
2985
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24679361 - 24679141
Alignment:
Q
1
aaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaa
100
Q
|||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||
T
24679361
aaaacaaaacatcctccaatgcgacgttcatgttttgaccactgactcgaaaataagaaacattttctatatagttataaaattacatgaacattcttaa
24679262
T
Q
101
caaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttg
200
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
24679261
taaagatgttggtatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccctcatcattattttcaattctatcgttgattttg
24679162
T
Q
201
gttttaagcagttcatctaat
221
Q
||||||| | |||||||||||
T
24679161
gttttaaacggttcatctaat
24679141
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 25341313 - 25341487
Alignment:
Q
48
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga
147
Q
|||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||| ||| |||||| |||| |||||| |||||||||||||
T
25341313
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga
25341412
T
Q
148
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt
222
Q
||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| ||||||||||||
T
25341413
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt
25341487
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 25345796 - 25345970
Alignment:
Q
48
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga
147
Q
|||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||| ||| |||||| |||| |||||| |||||||||||||
T
25345796
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga
25345895
T
Q
148
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt
222
Q
||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| ||||||||||||
T
25345896
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt
25345970
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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